CELLO protocols

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CELLO specifications

Information


Unique identifier OMICS_01618
Name CELLO
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline CELLO Team <>

Publication for CELLO

CELLO in pipelines

 (7)
2017
PMCID: 5300222
PMID: 28182704
DOI: 10.1371/journal.pone.0171944

[…] to protection [, , ]., the functionality and domain classification of 14 proteins () was conducted by interpro []. the subcellular localization of the individual proteins was predicted by the cello and psortb predictor [, ] that provide an output with reliability score for each location of each protein. commonly, protective b-cell protein antigens are located in the outer membrane […]

2017
PMCID: 5664134
PMID: 29053643
DOI: 10.3390/genes8100284

[…] and mw (molecular weight) of candidate genes were calculated using compute pi/mw tool online (http://web.expasy.org/compute_pi/). subcellular localization of these genes was predicted using the cello v2.5 web server []., multiple sequence alignments were performed using clustalw []. an unrooted phylogenetic tree was generated by mega 6.0 software using the neighbor-joining method […]

2016
PMCID: 4882050
PMID: 27228164
DOI: 10.1371/journal.pone.0156018

[…] a p-value < 0.05. those proteins that could not be annotated using panther were annotated with argot2 (total score > 200) [–]. the sub-cellular location of some proteins was predicted using cello v2.5 [,], and antigenicity was predicted using the kolaskar and tongaonkar antigenicity scale []., rna was purified from trophozoites or cls with the direct-zol rna miniprep kit (zymo research, […]

2016
PMCID: 5015957
PMID: 27606673
DOI: 10.1371/journal.pntd.0004988

[…] and beta strands, respectively. proteins with unclear subcellular localization predictions using the above bioinformatic pipeline were further analyzed using the following eight prediction tools. cello version 2.5 (http://cello.life.nctu.edu.tw/) [] was used to predict subcellular localization. philius (http://www.yeastrc.org/philius/pages/philius/runphilius.jsp) [], phobius […]

2016
PMCID: 5015957
PMID: 27606673
DOI: 10.1371/journal.pntd.0004988

[…] pred-tmbb []. proteins with unclear subcellular localization predictions using the above bioinformatics pipeline (n = 25) were further analyzed using an additional eight prediction tools including cello [], philius [], phobius [], octopus/spoctopus [], hmmtop [], tmpred, bomp [] and tmbetadisc-rbf []. a results summary of this analysis can be found in and ., in total, 116 proteins […]


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CELLO in publications

 (93)
PMCID: 5909277
PMID: 29673318
DOI: 10.1186/s12870-018-1286-5

[…] point (pi) of each ugt protein were calculated using the online expasy program (http://web.expasy.org/compute_pi/) []. the subcellular localization of each ugt protein was predicted using the online cello v2.5 system (http://cello.life.nctu.edu.tw/cello.html) []., multiple sequence alignments of the wheat ugt protein sequences were performed by muscle (http://www.ebi.ac.uk/tools/msa/muscle/). […]

PMCID: 5889549
PMID: 29625550
DOI: 10.1186/s12864-018-4606-0

[…] additionally, amino acid sequences of both arabidopsis and tomato g-lecrks were analyzed using targetp 1.1 server (http://www.cbs.dtu.dk/services/targetp/) and “subcellular localization predictor” cello v.2.5 (http://cello.life.nctu.edu.tw/) [, ]., to identify the arabidopsis g-lecrks, a blastp analysis [] was performed at the tair website using the region comprising the predicted g-type […]

PMCID: 5924525
PMID: 29597290
DOI: 10.3390/genes9040183

[…] bootstrap analysis using 100 replicates []., the subcellular localization was analyzed in silico using bacello [], eslpred [], yloc [], psort ii [], loctree3 [], wolf psort [], plant-mploc [], and cello []. the ncbi database was used to retrieve a 1500-bp dna sequence from the 5′-upstream region of each alba gene, and the corresponding cis-acting regulatory elements were investigated […]

PMCID: 5879067
PMID: 29032659
DOI: 10.4142/jvs.2018.19.2.188

[…] the computational tools and drug target-associated data available in the swiss-prot database (uniprot) []. the biological significance and subcellular localization of the proteins was predicted by cello v.2.5 (multi-class support vector machine classification system) [], and the transmembrane regions were predicted by using tmhmm v2.0 []. in addition, the experimentally and computationally […]

PMCID: 5859077
PMID: 29555947
DOI: 10.1038/s41598-018-23124-9

[…] in the evolution of dj-1 genes among arabidopsis, rice, medicago, and soybean.table 1abbreviations: ch chloroplast, cy cytosol, mt mitochondria, pm plasma membrane.alocalization prediction by cello v.2.5 (http://cello.life.nctu.edu.tw/).blocalization prediction by psort (http://wolfpsort.org/).cchloroplast localization signal confirmed by chlorop […]


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CELLO institution(s)
Department of Biological Science and Technology, National Chiao Tung University, Hsinchu, Taiwan, China

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