CellOrganizer statistics

To access cutting-edge analytics on consensus tools, life science contexts and associated fields, you will need to subscribe to our premium service.

Subscribe
info

Citations per year

Citations chart
info

Popular tool citations

chevron_left Image modelization Subcellular protein distribution chevron_right
Popular tools chart
info

Tool usage distribution map

Tool usage distribution map
info

Associated diseases

Associated diseases

CellOrganizer specifications

Information


Unique identifier OMICS_05646
Name CellOrganizer
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


Add your version

Maintainer


  • person_outline Robert F. Murphy <>

Publication for CellOrganizer

CellOrganizer in publications

 (3)
PMCID: 4741515
PMID: 26845334
DOI: 10.1371/journal.pcbi.1004611

[…] geometry studied below, biochemical reaction networks, with corresponding compartments for organelles, are constructed using bionetgen software [, ], combined with cell geometry models generated by cellorganizer software [–] using cellblender [] to create the mcell spatial simulations []. more information about this process of generating cellular instances with realistic cellular […]

PMCID: 4704559
PMID: 26624011
DOI: 10.1371/journal.pcbi.1004614

[…] distributions., all software and data for this work is available as a reproducible research archive (http://murphylab.web.cmu.edu/software). software is also available as part of the open source cellorganizer system (http://cellorganizer.org)., fluorescence microscope images can provide important information about the subcellular location of proteins, and automated systems can be used […]

PMCID: 4710235
PMID: 26354424
DOI: 10.1091/mbc.E15-06-0370

[…] lines. this correlation is reduced by altering protein c1qbp or various drugs. in addition, a generative model is given for the kinetics of shape change. the software is available in the open-source cellorganizer system., modeling cell shape variation is critical to our understanding of cell biology. previous work has demonstrated the utility of nonrigid image registration methods […]


To access a full list of publications, you will need to upgrade to our premium service.

CellOrganizer institution(s)
Lane Center for Computational Biology, Carnegie Mellon University, Pittsburgh, PA, USA

CellOrganizer reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review CellOrganizer