CellOrganizer statistics

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chevron_left Image modelization Subcellular protein distribution chevron_right
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CellOrganizer specifications


Unique identifier OMICS_05646
Name CellOrganizer
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


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  • person_outline Robert F. Murphy <>

Publication for CellOrganizer

CellOrganizer in publications

PMCID: 4741515
PMID: 26845334
DOI: 10.1371/journal.pcbi.1004611

[…] geometry studied below, biochemical reaction networks, with corresponding compartments for organelles, are constructed using bionetgen software [, ], combined with cell geometry models generated by cellorganizer software [–] using cellblender [] to create the mcell spatial simulations []. more information about this process of generating cellular instances with realistic cellular […]

PMCID: 4704559
PMID: 26624011
DOI: 10.1371/journal.pcbi.1004614

[…] distributions., all software and data for this work is available as a reproducible research archive (http://murphylab.web.cmu.edu/software). software is also available as part of the open source cellorganizer system (http://cellorganizer.org)., fluorescence microscope images can provide important information about the subcellular location of proteins, and automated systems can be used […]

PMCID: 4710235
PMID: 26354424
DOI: 10.1091/mbc.E15-06-0370

[…] lines. this correlation is reduced by altering protein c1qbp or various drugs. in addition, a generative model is given for the kinetics of shape change. the software is available in the open-source cellorganizer system., modeling cell shape variation is critical to our understanding of cell biology. previous work has demonstrated the utility of nonrigid image registration methods […]

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CellOrganizer institution(s)
Lane Center for Computational Biology, Carnegie Mellon University, Pittsburgh, PA, USA

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