CellPPD

[…] of 7 amino acids as minimum length. among the candidates, we found the highly cationic sequence (rrrkikr) in the par-binding motif (pbm) of iduna. in addition, we utilized cpp prediction analysis (cellppd, available online: http://crdd.osdd.net/raghava/cellppd/) [] to confirm the cpp candidate sequence in iduna. four of the ten predicted cpp candidate sequences within iduna that showed […]

[…] aat47125.1, aha41686.1, ccf79482.1, ail25648.1) were aligned using multalin server []. prediction and evaluation of potential cpps from vp1 protein n-terminus (cvp1) was carried out using cellppd server []. structural predictions of the cvp1 and tat (aa 47–57) were made using the pep-fold3 server []. the predicted structure was displayed using the pymol software. the mutant of cvp1 […]

[…] acid) with the inherent ability of interacting and penetrating phospholipid membranes []. to identify ctx-1 sections of interest, the protein sequence have been scanned throughout its length using “cellppd—protein scanning” web server in order to predict cpp fragments. the support vector machine (svm) based prediction model used was developed using a training set consisting in 708 peptides. svm […]

[…] respectively (https://www.thermofisher.com/co/en/home/life-science/protein-biology/peptides-proteins/custom-peptide-synthesis-services/peptide-analyzing-tool.html). permeability was predicted using cellppd (http://crdd.osdd.net/raghava/cellppd/index.html) which provided negative cpp values for these peptides (−0.06, −0.57 and −0.57 for ear7, ear16 and ear18, respectively), indicating […]

[…] of bioactive peptides sequences with antibacterial properties., peptide selection was performed based on a previous study () in which viral proteins were searched for amps and cpps using ampa and cellppd bioinformatic tools, respectively. the ampa server () is based on an antimicrobial propensity scale that considers the physical chemical properties of each amino acid, such as hydrophobicity […]