CellRouter specifications


Unique identifier OMICS_27635
Name CellRouter
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Requirements reshape, reshape2, pheatmap, clusterProfiler, ReactomePA, plotrix, tsne, igraph, ggplot2, DESeq, mclust, grid, scde, gplots, genefilter, Rtsne, DESeq2
Maintained Yes



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  • person_outline George Daley <>
  • person_outline James Collins <>

CellRouter article

CellRouter institution(s)
Stem Cell Transplantation Program, Division of Pediatric Hematology and Oncology, Boston Children’s Hospital and Dana-Farber Cancer Institute, Boston, MA, USA; Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, USA; Harvard Stem Cell Institute, Cambridge, MA, USA; Manton Center for Orphan Disease Research, Boston, MA, USA; Department of Systems Biology, Harvard Medical School, Boston, MA, USA; Department of Electrical and Electronic Engineering, Federal University of Santa Catarina, Florianopolis, Brazil; Department of Molecular Pharmacology and Experimental Therapeutics, Mayo Clinic, Rochester, MN, USA; Institute for Medical Engineering & Science, Department of Biological Engineering, and Synthetic Biology Center, Massachusetts Institute of Technology, Broad Institute of MIT and Harvard, Cambridge, MA, USA; Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA, USA
CellRouter funding source(s)
Supported by grants from the US National Institute of Diabetes and Digestive and Kidney Diseases (R24DK092760), the National Institute of Allergy and Infectious Diseases (R37AI039394), and the National Heart, Lung, Blood Institute Progenitor Cell Biology Consortium (UO1-HL100001) and the Progenitor Cell Translation Consortium (UO1-HL134812); the Doris Duke Medical Foundation, the US National Institute of Diabetes and Digestive and Kidney Diseases (K08DK114527-01), the St. Baldrick's Foundation, and Pedals for Pediatrics, the Wenner-Gren Foundation and the Howard Hughes Medical Institute.

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