CellScore statistics

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Citations per year

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Associated diseases

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CellScore specifications


Unique identifier OMICS_26769
Name CellScore
Software type Package/Module
Interface Command line interface
Restrictions to use None
Output format PDF
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Version 0.99
Stability Stable
Maintained Yes



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  • person_outline Nancy Mah <>
  • person_outline Katerina Taskova <>

Publication for CellScore

CellScore in publications

PMCID: 5814752
PMID: 29249694
DOI: 10.1016/j.chembiol.2017.11.004

[…] databases for which we do not have access (). the global score has the following formula (for pre-defined weights a = 8, b = 4, c = 2, d = e = f = 1):globalscore=a·selectivityscore+b·potencyscore+c ·cellscore+d·sarscore+e·inactiveanalogsscore+f·painsscorea+b+c+d+e+f, commercial availability is not reported as a score because we believe that this would discourage the supply of the best chemical […]

PMCID: 4943528
PMID: 27183103
DOI: 10.1038/ni.3458

[…] identification numbers were stored as image stacks. all subsequent analysis of cells was based on these masks., to exclude incorrectly segmented cells as well as noncellular debris, we developed cellscore - an empirical score of the likelihood that the detected object represents an intact cell. to calculate cellscore for each object, we calculated the mean pixel intensities in five […]

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CellScore institution(s)
Berlin-Brandenburg Center for Regenerative Therapies, Charité Universitätsmedizin Berlin, Campus Virchow Klinikum, Berlin, Germany; Faculty of Biology, Johannes-Gutenberg University of Mainz, Mainz, Germany; Institute for Molecular Biology gGmbH, Mainz, Germany
CellScore funding source(s)
Supported by the European Commission grant no. 334502 (hPSCreg) and the Innovative Medicines Initiative Grant for the European Bank for induced Pluripotent Stem Cells (EBiSC).

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