CellSegmentation3D specifications

Unique identifier:
OMICS_10248
Interface:
Command line interface
Input data:
CellSegmentation3D loads the 3D Analyze format image (the suffix ".img" or ".hdr" is not needed in the input image name), and the segmentation result is also saved as the Analyze format.
Operating system:
Unix/Linux
Stability:
Stable
Software type:
Package/Module
Restrictions to use:
None
Output data:
For each 3D input image, the program will output two results: 1) the segmentation result, in which all voxels belonging to the same cell are labelled with the same unique intensity, 2) the boundary map that separates segmented cells.
Computer skills:
Advanced
Maintained:
Yes

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CellSegmentation3D distribution

download

CellSegmentation3D support

Maintainer

  • Stephen T.C. Wong <>

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Publications

Institution(s)

Center for Bioinformatics, Harvard Center for Neurodegeneration and Repair, Harvard Medical School, Boston, MA, USA; School of Automation, Northwestern Polytechnic University, XI'an, China; Functional and Molecular Imaging Center, Department of Radiology, Brigham and Women's Hospital, Boston, MA, USA; Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT, USA

Funding source(s)

This work is funded by a Bioinformatics Research Center Program Grant from Harvard Center for Neurodegeneration and Repair, Harvard Medical School.

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