CellSeT statistics

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CellSeT specifications


Unique identifier OMICS_10508
Name CellSeT
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Output data The output of the program is a table of data containing the properties of any cells or walls of interest.
Operating system Windows
Programming languages C#
Computer skills Medium
Stability Stable
Maintained Yes


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  • person_outline Michael Pound <>

Publication for CellSeT

CellSeT in publications

PMCID: 5632646
PMID: 29046689
DOI: 10.3389/fpls.2017.01721

[…] and aerenchyma formation in a single image (figures , ), whilst maintaining high throughput., the resulting root images are suitable for analysis using numerous existing software packages such as cellset () phiv-rootcell () or rootscan (). the multicolor images also allow for rapid manual measurement of specific cell types such as xylem, metaxylem, and phloem., as an examplar experiment, […]

PMCID: 5467581
PMID: 28659942
DOI: 10.3389/fpls.2017.00988

[…] (media cybernetics, silver spring, md, united states)., these sections were also used to measure the cell area within the ovary wall and the fruit pericarp. cell segmentation was performed using the cellset software () to optimize automatic cell counting. area quantification was done using the image-pro plus software (supplementary figure ). for area quantification, 100 to 300 cells […]

PMCID: 5399669
PMID: 28348169
DOI: 10.1242/dev.146274

[…] electron microscopy analyses were conducted as previously described ()., the central longitudinal section of seeds at 4 daf, imaged using mps-pi, was segmented into individual cells using cellset software (). the length of the entire endothelium tissue and of individual ii1′ cells along the proximal-distal axis were calculated using imagej (). area and perimeter of ii1′ cells […]

PMCID: 4982081
PMID: 26889752
DOI: 10.1111/nph.13882

[…] the quiescent centre to the first cell that is double the length of the previous cell., mean relative fluorescence was calculated with imagej for pin1:gfp, proarr5::gfp, ptcs::gfp and dii:venus. cellset (pound et al., ) was used to measure pin2:gfp and aux1::yfp relative fluorescence. in quantifying fluorescence across replicate experiments (n = between 5 and 14, according […]

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CellSeT institution(s)
Centre for Plant Integrative Biology, University of Nottingham, Nottingham, UK; School of Computer Science, University of Nottingham, Nottingham, UK

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