CellSys

[…] multiple non-interacting single-cell instances concurrently on massively parallel computers. more examples include hpc abm frameworks for multi-core cpus such as compucell3d (swat et al., ,), cellsys (hoehme and drasdo, ), and morpheus (starruß et al., ). these frameworks target multi-core cpu acceleration on a single compute node using openmp. in addition, other techniques […]

[…] for very helpful advice. research in our laboratory is supported by erc adg 2011 294603 advanced grant from the european research council; bfu2015-66304-p and redes de excelencia bfu2014-52125-redt-cellsys from the spanish mineco, spain; and sgr agaur 2014 100 from generalitat de catalunya, spain., communicating editor: m. […]

[…] interests.,  research in our laboratory is supported by erc adg 2011 294603 advanced grant from the european research council; bfu2012-32522, bfu2015-66304-p, redes de excelencia bfu2014-52125-redt-cellsys, and juan de la cierva y bes-2013-064543 fellowships from the spanish mineco; and sgr agaur 2014 100 from generalitat de […]

[…] cell-based model. a longer-term challenge is to extend such comparison studies across simulation tools, of which there is an increasing ecosystem, including compucell3d [], morpheus [], episim [], cellsys [], virtualleaf [], biocellion [], biofvm [], lbibcell [] and embryomaker []. we emphasize here the lack of ‘benchmarks’ on which to make such comparisons. we propose that the present study […]

[…] equations. macroscopic cell behaviours are linked to intracellular molecular concentrations simulated using an external systems biology markup language (smbl) library such as libroadrunner; cellsys focuses on multi-agent simulations of tumour growth and lbibcell couples viscoelastic cell mechanics with reaction-advection-diffusion solvers, but neither includes grn specification., […]