CellSys statistics

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CellSys specifications


Unique identifier OMICS_09423
Name CellSys
Software type Package/Module
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Windows
Programming languages C++
Computer skills Medium
Stability Stable
Maintained Yes


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  • person_outline Stefan Hoehme <>

Publication for CellSys

CellSys in publications

PMCID: 5906585
PMID: 29706894
DOI: 10.3389/fphys.2018.00304

[…] multiple non-interacting single-cell instances concurrently on massively parallel computers. more examples include hpc abm frameworks for multi-core cpus such as compucell3d (swat et al., ,), cellsys (hoehme and drasdo, ), and morpheus (starruß et al., ). these frameworks target multi-core cpu acceleration on a single compute node using openmp. in addition, other techniques […]

PMCID: 5873911
PMID: 29467187
DOI: 10.1534/g3.117.300489

[…] for very helpful advice. research in our laboratory is supported by erc adg 2011 294603 advanced grant from the european research council; bfu2015-66304-p and redes de excelencia bfu2014-52125-redt-cellsys from the spanish mineco, spain; and sgr agaur 2014 100 from generalitat de catalunya, spain., communicating editor: m. […]

PMCID: 5577452
PMID: 28855394
DOI: 10.1098/rsob.170156

[…] interests.,  research in our laboratory is supported by erc adg 2011 294603 advanced grant from the european research council; bfu2012-32522, bfu2015-66304-p, redes de excelencia bfu2014-52125-redt-cellsys, and juan de la cierva y bes-2013-064543 fellowships from the spanish mineco; and sgr agaur 2014 100 from generalitat de […]

PMCID: 5330541
PMID: 28192427
DOI: 10.1371/journal.pcbi.1005387

[…] cell-based model. a longer-term challenge is to extend such comparison studies across simulation tools, of which there is an increasing ecosystem, including compucell3d [], morpheus [], episim [], cellsys [], virtualleaf [], biocellion [], biofvm [], lbibcell [] and embryomaker []. we emphasize here the lack of ‘benchmarks’ on which to make such comparisons. we propose that the present study […]

PMCID: 5264012
PMID: 28112150
DOI: 10.1038/ncomms13929

[…] equations. macroscopic cell behaviours are linked to intracellular molecular concentrations simulated using an external systems biology markup language (smbl) library such as libroadrunner; cellsys focuses on multi-agent simulations of tumour growth and lbibcell couples viscoelastic cell mechanics with reaction-advection-diffusion solvers, but neither includes grn specification., […]

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CellSys institution(s)
Interdisciplinary Centre for Bioinformatics, University of Leipzig, Germany; Institut National de Recherche en Informatique et en Automatique (INRIA) Unit Rocquencourt, Le Chesnay, France
CellSys funding source(s)
German Federal Ministry of Education and Research [HepatoSys 0313081F, LungSys 0315415F and VirtualLiver 0315735, in part]; European Union [CancerSys HEALTH-F4-2008-223188, Passport: 223894, in part]

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