CellTracker specifications

Unique identifier:
Command line interface, Graphical user interface
Input data:
MatLab, Image Processing Toolbox and for some optional functions Curve Fitting Toolbox
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Software type:
Restrictions to use:
Output data:
The output statistics are stored in human readable table file (Excel, .csv). Furthermore, it is possible to create movies and visualize migration over time in 3D graphs (x, y, time).
Programming languages:


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CellTracker support


  • Dr. Filippo Piccinini <>


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Advanced Research Center on Electronic Systems for Information and Communication Technologies “E. De Castro” (ARCES), University of Bologna, Bologna, Italy; Department of Biochemistry and Cell Biology, Max F. Perutz Laboratories (MFPL), University of Vienna, Vienna Biocenter (VBC),Vienna, Austria; Synthetic and System Biology Unit, Hungarian Academia of Sciences, Biological Research Center (BRC), Szeged, Hungary; Institute for Molecular Medicine Finland, University of Helsinki, Helsinki, Finland

Funding source(s)

The Finnish TEKES FiDiPro; Hungarian National Brain Research Programme (MTASE-NAP B-BIOMAG); EMBO, Heidelberg, Germany (EMBO ASTF 233-2015)

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