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|Interface||Graphical user interface|
|Restrictions to use||None|
|Operating system||Unix/Linux, Mac OS, Windows|
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- person_outline Pawan Dhar
Publication for Cellware
Systems Biology, Bioinformatics, and Biomarkers in Neuropsychiatry
[…] ru et al., ), JWS online (Olivier and Snoep, ), Copasi (Mendes et al., ), E-cell (Takahashi et al., ), Ingenuity Pathway Analysis (Jimenez-Marin et al., ), Cell Designer (Van Hemert and Dickerson, ), Cellware (Dhar et al., ), Cytoscape with the Network Analyzer Plugin (Shannon et al., ), and other tools like Simcell for more complex automated simulations (Tretter and Gebicke-Haerter, ). Some tools […]
Metabolic pathways variability and sequence/networks comparisons
[…] ntor score on the maximum likelihood estimate of the number of substitutions between two sequences was adopted for protein data. All the metabolic networks were downloaded from KEGG database  using Cellware platform . A total of 25 organisms were randomly selected from five prokaryotic genera based on the availability of metabolic data (Figure ). The total data space consisted of 31,945 metabo […]
Transition to Quorum Sensing in an Agrobacterium Population: A Stochastic Model
[…] lab (MathWorks, Natick, Massachusetts, United States). The stochastic model of the intracellular network was simulated with the exact Gillespie algorithm  using public-domain cell-modeling software Cellware [,]. To model stochastic population dynamics we developed a dedicated parallel software platform  that manages dynamically growing bacterial populations and utilizes Cellware to compute the […]
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