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Cellware specifications

Information


Unique identifier OMICS_11477
Name Cellware
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Version 3.0.1
Stability Stable
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Pawan Dhar

Publication for Cellware

Cellware citations

 (3)
library_books

Systems Biology, Bioinformatics, and Biomarkers in Neuropsychiatry

2012
Front Neurosci
PMCID: 3529307
PMID: 23269912
DOI: 10.3389/fnins.2012.00187

[…] ru et al., ), JWS online (Olivier and Snoep, ), Copasi (Mendes et al., ), E-cell (Takahashi et al., ), Ingenuity Pathway Analysis (Jimenez-Marin et al., ), Cell Designer (Van Hemert and Dickerson, ), Cellware (Dhar et al., ), Cytoscape with the Network Analyzer Plugin (Shannon et al., ), and other tools like Simcell for more complex automated simulations (Tretter and Gebicke-Haerter, ). Some tools […]

library_books

Metabolic pathways variability and sequence/networks comparisons

2006
BMC Bioinformatics
PMCID: 1360688
PMID: 16420696
DOI: 10.1186/1471-2105-7-24

[…] ntor score on the maximum likelihood estimate of the number of substitutions between two sequences was adopted for protein data. All the metabolic networks were downloaded from KEGG database [] using Cellware platform []. A total of 25 organisms were randomly selected from five prokaryotic genera based on the availability of metabolic data (Figure ). The total data space consisted of 31,945 metabo […]

call_split

Transition to Quorum Sensing in an Agrobacterium Population: A Stochastic Model

2005
PLoS Comput Biol
PMCID: 1214540
PMID: 16170413
DOI: 10.1371/journal.pcbi.0010037
call_split See protocol

[…] lab (MathWorks, Natick, Massachusetts, United States). The stochastic model of the intracellular network was simulated with the exact Gillespie algorithm [] using public-domain cell-modeling software Cellware [,]. To model stochastic population dynamics we developed a dedicated parallel software platform [] that manages dynamically growing bacterial populations and utilizes Cellware to compute the […]

Citations

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Cellware institution(s)
Systems Biology Group, Bioinformatics Institute, Singapore
Cellware funding source(s)
This work was supported by A*STAR, Singapore.

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