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CeNDR specifications

Information


Unique identifier OMICS_13229
Name CeNDR
Alternative name C. elegans Natural Diversity Resource
Restrictions to use None
Community driven No
Data access File download, Browse, Application programming interface
User data submission Allowed
Version 1.0.0
Maintained Yes

Taxon


  • Invertebrates
    • Caenorhabditis elegans

Documentation


Maintainer


  • person_outline Erik Andersen

Publication for C. elegans Natural Diversity Resource

CeNDR citations

 (4)
library_books

Polygenicity and Epistasis Underlie Fitness Proximal Traits in the Caenorhabditis elegans Multiparental Experimental Evolution (CeMEE) Panel

2017
Genetics
PMCID: 5714472
PMID: 29066469
DOI: 10.1534/genetics.117.300406

[…] s, and filtering across marker pairs for the presence of all four two-locus homozygote classes at a frequency of ≥3 in at least one test.Subset of 256,535 diallelic sites shared between the CeMEE and CeNDR panel with no missing or heterozygous calls. […]

library_books

Natural Variation in the Distribution and Abundance of Transposable Elements Across the Caenorhabditis elegans Species

2017
Mol Biol Evol
PMCID: 5850821
PMID: 28486636
DOI: 10.1093/molbev/msx155

[…] . All raw reads are deposited in the Sequence Read Archive with project number PRJNA318647. Alignment and variant call format (VCF) files are available from the C. elegans Natural Diversity Resource (CeNDR, http://www.elegansvariation.org/Data) (). […]

call_split

Balancing selection shapes density dependent foraging behavior

2016
Nature
PMCID: 5161598
PMID: 27799655
DOI: 10.1038/nature19848
call_split See protocol

[…] To create the gene and organism phylogenies, we used SNV data downloaded from the Million Mutation project (http://genome.sfu.ca/mmp/) or the CeNDR resource (http://www.elegansvariation.org). For the CeNDR dataset, MY14 was assumed to be clonal or near-clonal with MY23, as was suggested by RAD sequencing. Software was written in Python usin […]

library_books

Dual Receptor Recognizing Cell Penetrating Peptide for Selective Targeting, Efficient Intratumoral Diffusion and Synthesized Anti Glioma Therapy

2016
Theranostics
PMCID: 4729767
PMID: 26877777
DOI: 10.7150/thno.13532

[…] R8-dGR modified liposomes in the glioma tissue. The semi-quantitative results of the confocal images of glioma sections were analyzed using ImageJ and were shown in Fig. .Researchers suggested that CendR peptides would contribute to extravasation of the payload and penetration into tumor tissue through an NRP-1-binding pathway, and in this study it was proved that dual receptor recognizing abili […]

Citations

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CeNDR institution(s)
Interdisciplinary Biological Sciences Program, Northwestern University, Evanston, IL, USA; Department of Molecular Biosciences, Northwestern University, Evanston, IL, USA
CeNDR funding source(s)
Supported by National Institutes of Health [R01GM107227]; American Cancer Society Research Scholar Award; Amazon Web Services Research Grant; Weinberg College of Arts and Sciences starter innovation award; National Science Foundation Graduate Research Fellowship [DGE-1324585]; Northwestern University Start-up Funds.

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