CENSOR pipeline

CENSOR specifications

Information


Unique identifier OMICS_05560
Name CENSOR
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for CENSOR

CENSOR citations

 (3)
2015
PMCID: 4494074

[…] order to see their target preference or specificity. target preference for microsatellites was determined manually. target preference for multicopy genes or transposons was determined by performing censor (kohany et al. 2006) against repbase. if a certain type of sequence is seen in more than 20% of the flanking sequences of a certain non-ltr retrotransposon family, this family is considered […]

2011
PMCID: 3212892

[…] ngaro were obtained from repbase http://www.girinst.org/repbase/. all characterized cryptons have been deposited in repbase., characterization of new cryptons was achieved by repeated blast [64] and censor [65] searches using genome sequences of various species with cryptons as queries. all analyses were done with default settings. the consensus sequences of elements were derived using […]

2009
PMCID: 2784321

[…] using swisspdb-viewer and quickpdb from the rscb protein data bank for available structures., dna regions in the o. bayeri contigs showing homology with fungal repeated elements were identified with censor [64] from the genetic information research institute webserver. repeated elements arrayed in tandem in the o. bayeri contigs were determined with tandem repeat finder 4.03 [65] using […]

CENSOR institution(s)
Genetic Information Research Institute, Mountain View, CA, USA

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