CENTDIST protocols

View CENTDIST computational protocol

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CENTDIST specifications

Information


Unique identifier OMICS_08385
Name CENTDIST
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Edwin Cheung <>

Publication for CENTDIST

CENTDIST in pipeline

2016
PMCID: 4987520
PMID: 27507714
DOI: 10.1038/ncomms12376

[…] as well as control and mef2c-deficient pre-b cells or myeloid cells. peaks that had at least four times more reads in one condition and had p value≤0.01 were considered differentially accessible. centdist analysis was used to identify transcription factor-binding motifs enriched within different subsets of differentially accessible regions. great program was used to associate identified […]


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CENTDIST in publications

 (19)
PMCID: 5643126
PMID: 29036206
DOI: 10.1371/journal.pone.0186509

[…] research and quality (ahrq) – healthcare utilization project (hcup). researchers who complete the data use agreement training can purchase the data at: http://www.hcup-us.ahrq.gov/tech_assist/centdist.jsp., according to the most recent united states national climate assessment, mean temperatures are likely to increase by 2°f to 4°f in the u.s. over the next few decades with higher […]

PMCID: 5469480
PMID: 28609479
DOI: 10.1371/journal.pone.0179466

[…] data user agreement with hcup-ahrq. the data is available from the online hcup central distributor. phone: 866-556-hcup (4287) email: [email protected]://www.hcup-us.ahrq.gov/tech_assist/centdist.jsp., renal transplantation, either from cadaveric or living donor, is considered the treatment of choice for most adult patients with end-stage renal disease. successful renal […]

PMCID: 5404328
PMID: 28440307
DOI: 10.1038/srep46440

[…] introns (46%), 3′-utrs (1%), transcription termination sites (tts, 2%) and intergenic (39%) regions (, ). top enriched transcription factor binding site motifs within the c/ebpε peaks highlighted by centdist include the expected c/ebp homodimer consensus motif ranked at the first position with a p-value ~0 (complete enriched matrices list is available in ). the de novo motif analysis performed […]

PMCID: 5327392
PMID: 28240320
DOI: 10.1038/srep43597

[…] factors have function on a set of genes. there are some mea methods for motif enrichment analysis with difference features and performances, such as contra, pastaa, spamo, ceas, core_tf and centdist., contra (conserved tfbss) can do motif enrichment analysis in the promoters of genes. with gene sequences of several species, contra checks whether motif binding sites are conserved […]

PMCID: 5223348
PMID: 28068916
DOI: 10.1186/s12864-016-3450-3

[…] condition-specific tf peaks can be identified by altering cellular conditions, which further reveal motifs recognized by dna-binding tfs or their co-regulatory counterparts. for example, the centdist web server identifies co-regulatory tfs in complexes by investigating tf motifs enriched in the chip-seq peaks for a tf []. in addition, the spacing of tf-pair binding motifs is often […]


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CENTDIST institution(s)
School of Computing, National University of Singapore, Computing, Singapore

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