CentiBiN protocols

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description
CentiBiN computational protocol

CentiBiN specifications

Information


Unique identifier OMICS_12247
Name CentiBiN
Alternative name Centralities in Biological Networks
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Version 1.4.2
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Dirk Kosch├╝tzki <>

Information


Unique identifier OMICS_12247
Name CentiBiN
Alternative name Centralities in Biological Networks
Interface Web user interface
Restrictions to use None
Programming languages Java
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Dirk Kosch├╝tzki <>

Publication for Centralities in Biological Networks

CentiBiN IN pipeline

2017
PMCID: 5449392
PMID: 28559546
DOI: 10.1038/s41598-017-02522-5

[…] degree, closeness, radiality, shortest-path betweenness, current-flow betweenness, current-flow closeness, centroid, page rank, vulnerability, stress and eigenvector were calculated using software centibin, cytoscape 3.2.1, and in-house code55, 56. detailed information about these centralities is given in the supplementary data., the genes were ranked according to their importance […]

CentiBiN institution(s)
Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany
CentiBiN funding source(s)
The German Ministry of Education and Research (BMBF) supported part of this work under grants 0312706A and 0313115.

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