CentroidFold specifications

Information


Unique identifier OMICS_03449
Name CentroidFold
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for CentroidFold

CentroidFold in publications

 (19)
PMCID: 5686824
PMID: 29137642
DOI: 10.1186/s12934-017-0812-8

[…] 14 codons, was predicted and analyzed using the rtools web server (http://rtools.cbrc.jp/cgi-bin/index.cgi). this server provides a rich set of tools for analyzing a single rna sequence:we used the centroidfold tool for the structure prediction []. based on a generalized centroid estimator, centroidfold is one of the most accurate tools for predicting rna secondary structures.then, we used […]

PMCID: 5141509
PMID: 27924926
DOI: 10.1038/srep38612

[…] long sequences flanking in the alignment the position of the known 5′ and 3′ bsminiiii cleavage sites in b. subtilis 23 s pre-rrna were extracted and used in secondary structure prediction with centroidfold web server using default parameters. secondary structure prediction was carried out using psipred using default parameters., how to cite this article: głów, d. et al. identification […]

PMCID: 4899534
PMID: 27335622
DOI: 10.2174/1874285801610010097

[…] by the mfold web-based software (mfold.rna.albany.edu) [], the rnafold online server (rna.tbi.univie.ac.at) and genebee (www.genebee.msu.su/services/ rna2_reduced.html). results were confirmed by centroidfold web server, indicated the mrna was stable enough for effectual translation in the prokaryotic host []., the prediction of secondary structure of the chimeric protein was performed using […]

PMCID: 4838527
PMID: 27103888
DOI: 10.5808/GI.2016.14.1.29

[…] seeds, and the minimum score was defined as the cutoff (45.0)., the precursor rna molecule of msdna forms a characteristic secondary structure. we used a local installation of the software tool centroidfold [] to predict the secondary structure of the msr/msd portion of the candidate retron. as the palindrome terminates with a g residue in both strands, the 5' of which is the branching […]

PMCID: 5291577
PMID: 26825907
DOI: 10.1097/MD.0000000000002592

[…] the primary antibody in our ihc study was rabbit anti-human cyclin d1 monoclonal antibody (thermo scientific, fremont, ca)., the secondary mrna structure of fal1 was predicted using the web server centroidfold (http://www.ncrna.org/centroidfold). lncrna microarray data (accession no. gse61763, 15 corresponding normal and malignant tissues) were obtained from the gene expression omnibus (geo) […]


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CentroidFold institution(s)
Japan Biological Informatics Consortium, Koto-ku, Tokyo, Japan

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