CentroidHomfold statistics

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CentroidHomfold specifications

Information


Unique identifier OMICS_03450
Name CentroidHomfold
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Information


Unique identifier OMICS_03450
Name CentroidHomfold
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for CentroidHomfold

CentroidHomfold in publications

 (3)
PMCID: 5641303
PMID: 29067038
DOI: 10.3389/fgene.2017.00147

[…] s2, s3. the sequences are included in supplementary file . templates including their sequences and structures are included in supplementary file . the dataset was created from the test dataset of centroidhomfold (kiryu et al., ; hamada et al., ) and extended with other rnas to get more sequence/structure variability. the dataset consisted of 32 rna families where at least one experimentally […]

PMCID: 4402540
PMID: 25800741
DOI: 10.1093/nar/gkv228

[…] bovine serum at 37°c in a humidified atmosphere with 5% co2 and 95% air., the secondary structures of chimeric ncrnas were predicted using the centroidfold (http://www.ncrna.org/centroidfold) () and centroidhomfold (http://www.ncrna.org/centroidhomfold) ()., individual trna/pre-mirna expression plasmids were cloned as we reported (), following pcr amplification of target sequences from human […]

PMCID: 3041832
PMID: 21365017
DOI: 10.1371/journal.pone.0016450

[…] rna sequences and is the length of rna sequences. in , we employed a further approximation of the estimator, and reduced the computational cost to . we implemented this estimator in software called centroidhomfold. see for details of the theory and results of computational experiments. although the authors did not mention it in their paper , the following property holds., property 19 […]


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CentroidHomfold institution(s)
Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba, Japan

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