Cerulean specifications

Unique identifier:
OMICS_13522
Interface:
Command line interface
Input data:
Assembled contigs from ABySS short read assembler, mapping of Pacbio reads to ABySS contigs using BLASR
Output data:
Assembled contigs
Biological technology:
Illumina, Pacific Biosciences
Programming languages:
Python
Version:
0.1.1
Requirements:
Numpy, Matplotlib, ABySS assembler, SMRT Analysis tookit, PBJelly, Illumina, PacBio
Software type:
Pipeline/Workflow
Restrictions to use:
None
Input format:
FASTQ, FASTA
Output format:
FASTA
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes

versioning

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Cerulean distribution

download

Cerulean support

Documentation

Maintainer

  • Vineet Bafna <>

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Credits

Institution(s)

Department of Computer Science & Engineering, University of California, San Diego, CA, USA; Bioinformatics Undergraduate Program, Department of Bioengineering, University of California, San Diego, CA, USA

Funding source(s)

This work was supported in part by NIH grants 5RO1-HG004962 and U54 HL108460, and by the NSF grant NSF-CCF-1115206; and in part by NIH grant 3P41RR024851-02S1.

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