Cerulean specifications


Unique identifier OMICS_13522
Name Cerulean
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data Assembled contigs from ABySS short read assembler, mapping of Pacbio reads to ABySS contigs using BLASR
Input format FASTQ, FASTA
Output data Assembled contigs
Output format FASTA
Biological technology Illumina, Pacific Biosciences
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Version 0.1.1
Stability Stable
Requirements Numpy, Matplotlib, ABySS assembler, SMRT Analysis tookit, PBJelly, Illumina, PacBio
Maintained Yes



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  • person_outline Vineet Bafna <>
Cerulean institution(s)
Department of Computer Science & Engineering, University of California, San Diego, CA, USA; Bioinformatics Undergraduate Program, Department of Bioengineering, University of California, San Diego, CA, USA
Cerulean funding source(s)
This work was supported in part by NIH grants 5RO1-HG004962 and U54 HL108460, and by the NSF grant NSF-CCF-1115206; and in part by NIH grant 3P41RR024851-02S1.

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