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Protocols

Cervus specifications

Information


Unique identifier OMICS_30350
Name Cervus
Software type Application/Script
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Operating system Windows
Computer skills Medium
Version 3.0.7
Stability Stable
Registration required Yes
Maintained Yes

Versioning


No version available

Maintainers


  • person_outline Steven Kalinowski
  • person_outline Cervus Team

Publications for Cervus

Cervus citations

 (328)
library_books

Development of novel EST SSR markers for ploidy identification based on de novo transcriptome assembly for Misgurnus anguillicaudatus

2018
PLoS One
PMCID: 5896994
PMID: 29649332
DOI: 10.1371/journal.pone.0195829

[…] and visualized by silver staining.The number of alleles (Na), observed heterozygosity (Ho), expected heterozygosity (He), and the frequency of null alleles (Fnull) at each locus were calculated using Cervus 3.0 []. The polymorphism information content (PIC) was calculated using the Excel Microsatellite Toolkit v3.1 [], and Deviation of Hardy-Weinberg Equilibrium (PHW) was evaluated with the GENEPO […]

library_books

Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data

2018
BMC Genomics
PMCID: 5885378
PMID: 29618324
DOI: 10.1186/s12864-018-4633-x

[…] Genetics, LLC, State College, PA, USA). Genetic diversity parameters, including the number of alleles, observed and expected heterozygosity, and polymorphism information content, were estimated using CERVUS v3.0 []. Deviations from Hardy-Weinberg equilibrium were tested through GENEPOP v4.2 []. SSR genotypes’ assignment to different clusters was tested with STRUCTURE v2.3.3 [], using 10 replicates […]

library_books

Upwelling and eddies affect connectivity among local populations of the goldeye rockfish, Sebastes thompsoni (Pisces, Scorpaenoidei)

2018
Ecol Evol
PMCID: 5938445
PMID: 29760881
DOI: 10.1002/ece3.3993

[…] ches, and 10,000 iterations). Observed (H O) and expected (H E) heterozygosities were estimated using Arlequin 3.5.1.2 (Excoffier et al., ). Polymorphic information content (PIC) was calculated using Cervus 3.0.6 (Kalinowski, Taper, & Marshall, ). Pairwise F ST values between sampling locations within species or between S. thompsoni and S. joyneri were estimated with 10,000 permutations using Arle […]

call_split

Migratory culture, population structure and stock identity in North Pacific beluga whales (Delphinapterus leucas)

2018
PLoS One
PMCID: 5863979
PMID: 29566001
DOI: 10.1371/journal.pone.0194201
call_split See protocol

[…] ] and nucleotide (π) [] diversity using Arlequin 3.5 software []. Estimation of genetic diversity (He, Ho and number of alleles) and probabilities of identity (I) for nuclear loci was performed using Cervus 3.0 []. Tests for Hardy-Weinberg (H-W) and linkage equilibria were performed in Genepop 4.1 [] with P-values estimated from 500,000 iterations of the data using the Mark chain method of Guo and […]

library_books

High polymorphism in MHC DRB genes in golden snub nosed monkeys reveals balancing selection in small, isolated populations

2018
BMC Evol Biol
PMCID: 5851093
PMID: 29534675
DOI: 10.1186/s12862-018-1148-7

[…] th calculated using fstat V2.9.3 []. Expected heterozygosity (HE), observed heterozygosity (HO), polymorphism information content (PIC) and the frequency of null alleles (Pnull) were calculated using cervus V3.0 []. The effective number of alleles (AE) per locus and F-statistics (FST) were both computed using genalex V6.5 []. In addition, Tajima’s test was conducted using dnasp V5.10.01 []. A posi […]

call_split

Mating system and extra pair paternity in the Fan tailed Gerygone Gerygone flavolateralis in relation to parasitism by the Shining Bronze cuckoo Chalcites lucidus

2018
PLoS One
PMCID: 5843341
PMID: 29518150
DOI: 10.1371/journal.pone.0194059
call_split See protocol

[…] osatellite markers of all sampled individuals, following the methods described in Gazda et al. []. Then, we determined paternity within each breeding attempt through a likelihood-based approach using CERVUS 3.0.7 []. We checked for all nestlings if the female captured near an active nest was in fact the mother; in all cases, the parentage analysis confirmed maternity. We considered a male as the f […]


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Cervus institution(s)
Department of Ecology, Montana State University, Bozeman, MT, USA; Field Genetics Limited, London, UK
Cervus funding source(s)
Supported by an NSF grant (DEB 0415932).

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