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Information
| Unique identifier | OMICS_30350 |
|---|---|
| Name | Cervus |
| Software type | Application/Script |
| Interface | Graphical user interface |
| Restrictions to use | Academic or non-commercial use |
| Operating system | Windows |
| Computer skills | Medium |
| Version | 3.0.7 |
| Stability | Stable |
| Registration required | Yes |
| Maintained | Yes |
Versioning
No version available
Maintainers
- person_outline Steven Kalinowski
- person_outline Cervus Team
Publications for Cervus
Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment.
Statistical confidence for likelihood-based paternity inference in natural populations.
Cervus citations
(328)Development of novel EST SSR markers for ploidy identification based on de novo transcriptome assembly for Misgurnus anguillicaudatus
[…] and visualized by silver staining.The number of alleles (Na), observed heterozygosity (Ho), expected heterozygosity (He), and the frequency of null alleles (Fnull) at each locus were calculated using Cervus 3.0 []. The polymorphism information content (PIC) was calculated using the Excel Microsatellite Toolkit v3.1 [], and Deviation of Hardy-Weinberg Equilibrium (PHW) was evaluated with the GENEPO […]
Chloroplast genome analyses and genomic resource development for epilithic sister genera Oresitrophe and Mukdenia (Saxifragaceae), using genome skimming data
[…] Genetics, LLC, State College, PA, USA). Genetic diversity parameters, including the number of alleles, observed and expected heterozygosity, and polymorphism information content, were estimated using CERVUS v3.0 []. Deviations from Hardy-Weinberg equilibrium were tested through GENEPOP v4.2 []. SSR genotypes’ assignment to different clusters was tested with STRUCTURE v2.3.3 [], using 10 replicates […]
Upwelling and eddies affect connectivity among local populations of the goldeye rockfish, Sebastes thompsoni (Pisces, Scorpaenoidei)
[…] ches, and 10,000 iterations). Observed (H O) and expected (H E) heterozygosities were estimated using Arlequin 3.5.1.2 (Excoffier et al., ). Polymorphic information content (PIC) was calculated using Cervus 3.0.6 (Kalinowski, Taper, & Marshall, ). Pairwise F ST values between sampling locations within species or between S. thompsoni and S. joyneri were estimated with 10,000 permutations using Arle […]
Migratory culture, population structure and stock identity in North Pacific beluga whales (Delphinapterus leucas)
[…] ] and nucleotide (π) [] diversity using Arlequin 3.5 software []. Estimation of genetic diversity (He, Ho and number of alleles) and probabilities of identity (I) for nuclear loci was performed using Cervus 3.0 []. Tests for Hardy-Weinberg (H-W) and linkage equilibria were performed in Genepop 4.1 [] with P-values estimated from 500,000 iterations of the data using the Mark chain method of Guo and […]
High polymorphism in MHC DRB genes in golden snub nosed monkeys reveals balancing selection in small, isolated populations
[…] th calculated using fstat V2.9.3 []. Expected heterozygosity (HE), observed heterozygosity (HO), polymorphism information content (PIC) and the frequency of null alleles (Pnull) were calculated using cervus V3.0 []. The effective number of alleles (AE) per locus and F-statistics (FST) were both computed using genalex V6.5 []. In addition, Tajima’s test was conducted using dnasp V5.10.01 []. A posi […]
Mating system and extra pair paternity in the Fan tailed Gerygone Gerygone flavolateralis in relation to parasitism by the Shining Bronze cuckoo Chalcites lucidus
[…] osatellite markers of all sampled individuals, following the methods described in Gazda et al. []. Then, we determined paternity within each breeding attempt through a likelihood-based approach using CERVUS 3.0.7 []. We checked for all nestlings if the female captured near an active nest was in fact the mother; in all cases, the parentage analysis confirmed maternity. We considered a male as the f […]
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