CESAR pipeline

CESAR specifications


Unique identifier OMICS_20629
Alternative name Coding Exon Structure Aware Realigner
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C
License MIT License
Computer skills Advanced
Version 2.0
Stability Stable
Registration required Yes



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Publications for Coding Exon Structure Aware Realigner

CESAR IN pipeline

PMCID: 5737078
PMID: 28645144
DOI: 10.1093/nar/gkx554

[…] excluding all genes, which have a frameshift in the hg38 genome (polymorphisms or programmed ribosomal frameshifting). for each of the remaining 195 279 coding exons in 19 846 genes, we applied cesar to realign the exonic sequence. then, we extracted all exons that have an intact open reading frame and two consensus splice sites (internal exons) or a consensus donor/acceptor splice site […]

CESAR institution(s)
Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany; Max Planck Institute for the Physics of Complex Systems, Dresden, Germany
CESAR funding source(s)
Supported by the Max Planck Society and the German Research Foundation (HI 1423/3-1).

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