CexoR specifications

Information


Unique identifier OMICS_00519
Name CexoR
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0, GNU General Public License version 2.0
Computer skills Advanced
Version 1.18.0
Stability Stable
Requirements
R(>=2.10.0), RColorBrewer, BiocGenerics, IRanges, GenomicRanges, Rsamtools, S4Vectors, GenomeInfoDb, rtracklayer, BiocStyle, RUnit, idr, genomation
Maintained Yes

Versioning


No version available

Documentation


CexoR citation

library_books

Data exploration, quality control and statistical analysis of ChIP exo/nexus experiments

2017
Nucleic Acids Res
PMCID: 5587812
PMID: 28911122
DOI: 10.1093/nar/gkx594

[…] her factors. This is an important point with implications on the statistical analysis of ChIP-exo data. Specifically, currently available ChIP-exo specific statistical analysis methods (e.g. MACE (), CexoR () and Peakzilla ()) rely on the existence of peak-pairs formed by forward and reverse strand reads at the binding site. Finally, most of current widely used ChIP-seq quality control (QC) guidel […]

CexoR reviews

 (2)
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Anonymous user #27429

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Hi,

I have run CexoR in ChIP_exo replicates. It reports me error message : "Error in while (to.run) { : missing value where TRUE/FALSE needed".

I have submitted following commands:
R library(CexoR)

R genome chipexo
Anonymous user #197's avatar image No country

Anonymous user #197

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Nice package