Computational protocol: HIV type 1 drug resistance patterns among patients failing first and second line antiretroviral therapy in Nairobi, Kenya

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Protocol publication

[…] Genotypic drug resistance in the pol-RT region was defined as the presence of one or more resistance-related mutations, as specified by the consensus mutation figures of the International AIDS Society-USA []. HIV subtyping tools, genotype (, RIP (, and Jumping HMMER (, were used in confirming subtyping []. […]

Pipeline specifications

Software tools HMMER, jpHMM
Application Phylogenetics
Organisms Human immunodeficiency virus 1, Human immunodeficiency virus 2, Homo sapiens