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CFM-ID specifications


Unique identifier OMICS_04648
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes


  • person_outline Felicity Allen

Publication for CFM-ID

CFM-ID citations


Detection of Coccidioides posadasii from xerophytic environments in Venezuela reveals risk of naturally acquired coccidioidomycosis infections

PMCID: 5874253
PMID: 29593263
DOI: 10.1038/s41426-018-0049-6

[…] sed assay was employed to screen for Coccidioides in the Venezuelan soil samples, which is derived from an FDA approved clinical assay ( = DEN170041)–. The assay was performed on the Applied Biosystems 7900HT Real-Time PCR System (Thermo Fisher Scientific) and each 10 µL reaction mixture contained 1 × PerfeCT Taq PCR Fast Mix II […]


Promising Metabolite Profiles in the Plasma and CSF of Early Clinical Parkinson's Disease

PMCID: 5844983
PMID: 29556190
DOI: 10.3389/fnagi.2018.00051

[…] ctra were matched against online databases such as Metlin and MassBank (validation level 2) or against in silico fragmentation spectra (validation level 3) retrieved from Metfrag (Ruttkies et al., ), CFM-ID (Allen et al., ) and/or CSI:FingerID (Dührkop et al., ) with precursor mass accuracy of 20 ppm and fragment accuracy of 0.01 Da. Semi-quantitative metabolite intensities were calculated using t […]


Aquanet Bowel Cleansing Device Versus Oral Sodium Picosulfate for Pre Endoscopy Bowel Preparation: Propensity Score Analysis for Interventional Effectiveness Evaluation

PMCID: 5827897
PMID: 29511401
DOI: 10.14740/gr942w

[…] December 2016), and approved by the various regulatory authorities for market approval and licensing including FDA, Health Canada, and EU (, last accessed December 2016). The procedure was inexpensive and the process lasted 40 - 60 min. It makes use of filtered, ultraviolet treated water and derives the water pressure from […]


Enhanced Isotopic Ratio Outlier Analysis (IROA) Peak Detection and Identification with Ultra High Resolution GC Orbitrap/MS: Potential Application for Investigation of Model Organism Metabolomes

PMCID: 5875999
PMID: 29346327
DOI: 10.3390/metabo8010009
call_split See protocol

[…] ftware. An EI data file was first inputted into AMDIS software. The corresponding peak was then imported to the NIST MS search and then exported as an MSP file. The MSP file can then be inputted into CFM-ID to search for candidates ( SMILE strings for original metabolites (underivatized form) for the candidates can be obtained through HMDB or the PubChem websi […]


Changing hearts and minds: Results from a multi country gender and sexual diversity training

PLoS One
PMCID: 5604941
PMID: 28926568
DOI: 10.1371/journal.pone.0184484

[…] ing, joining other participants in conversations about GSD concepts and meaningful engagement. The final training manual and materials are available online at […]


Treatment strategies for the right heart in pulmonary hypertension

PMCID: 5852547
PMID: 28957540
DOI: 10.1093/cvr/cvx148

[…] ted percutaneously. Recently, such a device (Abiomed Impella RP) was used for RV assist after a Humanitarian Device Exemption was provided [ (11 August 2017)]. Percutaneous devices and extracorporeal membrane oxygenation (ECMO) in the context of PH are not suitable for long-term use. For potential long-term treatment strateg […]

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CFM-ID institution(s)
Department of Computing Science, Athabasca Hall, University of Alberta, Edmonton, Canada

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