CGAL specifications


Unique identifier OMICS_04066
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Mapped reads to assemblies
Input format SAM
Output data Number of contigs, total likelihood value, likelihood value of reads mapped by the mapping tool, likelihood value corresponding to reads not mapped, total number of paired-end reads, number of reads not mapped by the mapper
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++
Computer skills Advanced
Version 0.9.6
Stability Beta
Maintained Yes



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Publication for CGAL

CGAL institution(s)
Department of Electrical Engineering and Computer Sciences, University of California Berkeley, Berkeley, CA, USA; Departments of Mathematics and Molecular & Cell Biology, University of California Berkeley, Berkeley, CA, USA
CGAL funding source(s)
This work was funded by NIH R21 HG006583, Fulbright Science & Technology Fellowship 15093630.

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