CGAL specifications

Unique identifier:
OMICS_04066
Interface:
Command line interface
Input data:
Mapped reads to assemblies
Output data:
Number of contigs, total likelihood value, likelihood value of reads mapped by the mapping tool, likelihood value corresponding to reads not mapped, total number of paired-end reads, number of reads not mapped by the mapper
Programming languages:
C++
Version:
0.9.6
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Input format:
SAM
Operating system:
Unix/Linux, Mac OS, Windows
Computer skills:
Advanced
Stability:
Beta

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

CGAL distribution

download

forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Department of Electrical Engineering and Computer Sciences, University of California Berkeley, Berkeley, CA, USA; Departments of Mathematics and Molecular & Cell Biology, University of California Berkeley, Berkeley, CA, USA

Funding source(s)

This work was funded by NIH R21 HG006583, Fulbright Science & Technology Fellowship 15093630.

User review

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.