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CGAP specifications

Information


Unique identifier OMICS_07503
Name CGAP
Alternative name Cancer Genome Anatomy Project
Restrictions to use None
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/Cancer_Genome_Anatomy_Project

Taxon


  • Primates
    • Homo sapiens

Publication for Cancer Genome Anatomy Project

CGAP citations

 (10)
library_books

Recurrent chimeric fusion RNAs in non cancer tissues and cells

2016
Nucleic Acids Res
PMCID: 4824105
PMID: 26837576
DOI: 10.1093/nar/gkw032

[…] ic fusions may exist in normal cells. At the time this manuscript was prepared, there were 2276 fusions documented in the Mitelman Database of Chromosome Aberrations and Gene Fusions in Cancer in the Cancer Genome Anatomy Project (). Thirteen fusions were common to this list and the list of fusions we found in normal tissues/cells, including ADCK4-NUMBL, CTSC-RAB38, PBXIP1-PMVK and SCNN1A-TNFRSF1A […]

library_books

Targeted Sequencing in Chromosome 17q Linkage Region Identifies Familial Glioma Candidates in the Gliogene Consortium

2015
Sci Rep
PMCID: 4317686
PMID: 25652157
DOI: 10.1038/srep08278

[…] ome Consortium (https://dcc.icgc.org/).Targeted deletion of G6PC in mice leads to hepatic tumorigenesis, and this gene is expressed at comparable levels in the central nervous system according to the Cancer Genome Anatomy Project. Along with the finding that both affected (with low grade glioma) and no unaffected members of Family A carried the G6PC missense variant in their germline (scaled C-sco […]

library_books

Conserved Nonsense Prone CpG Sites in Apoptosis Regulatory Genes: Conditional Stop Signs on the Road to Cell Death

2013
Evol Bioinform Online
PMCID: 3728200
PMID: 23908585
DOI: 10.4137/EBO.S11759

[…] forms, the longest coding sequence was used; mono- and dinucleotide composition was assessed using Perl scripts and/or the GeneR package in R2.14.1. Comparison of mutations in tumors was based on the Cancer Genome Anatomy Project Cancer Gene Census (http://www.sanger.ac.uk/genetics/CGP/Census)., Frame-dependent dinucleotide composition and asymmetries were analyzed using GeneR. For the analyses of […]

library_books

Identification of a KEAP1 Germline Mutation in a Family with Multinodular Goitre

2013
PLoS One
PMCID: 3665763
PMID: 23724128
DOI: 10.1371/journal.pone.0065141

[…] ted as "polymorphism" by the Mutation Taster program, and expression of this gene in the thyroid was suggested to be considerably low based on several databases including BioGPS (http://biogps.org/), Cancer Genome Anatomy Project (http://cgap.nci.nih.gov/SAGE) and GeneHub-GEPIS (http://research-public.gene.com/Research/genentech/genehub-gepis/). These results suggested that the variant in MUC16 co […]

call_split

SNP SNP Interaction Network in Angiogenesis Genes Associated with Prostate Cancer Aggressiveness

2013
PLoS One
PMCID: 3618555
PMID: 23593148
DOI: 10.1371/journal.pone.0059688
call_split See protocol

[…] onsidered to have aggressive prostate cancer. We identified genes encoding proteins involved in or related to angiogenesis through searching published literature (PubMed) and public pathway database (Cancer Genome Anatomy Project, Kyoto Encyclopedia of Gene and Genomes and Gene Ontology). A total of 2,653 SNPs in the 161 angiogenesis genes were examined. The Hardy-Weinberg equilibrium was examined […]

library_books

The Accuracy of Survival Time Prediction for Patients with Glioma Is Improved by Measuring Mitotic Spindle Checkpoint Gene Expression

2011
PLoS One
PMCID: 3192043
PMID: 22022424
DOI: 10.1371/journal.pone.0025631

[…] glioma RNA expression from various platforms that had already been used to identify hundreds of significant correlations of RNA levels with increasing glioma grade , , , including data stored at the Cancer Genome Anatomy Project (http://cgap.nci.nih.gov/Genes).We found eight genes involved in the mitotic spindle assembly checkpoint (SAC) which were positively and reliably correlated with grade. S […]

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