cgDNA statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

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Associated diseases

Associated diseases

cgDNA specifications


Unique identifier OMICS_05735
Name cgDNA
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages MATLAB
Computer skills Advanced
Stability Stable
Maintained Yes


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Publication for cgDNA

cgDNA in publications

PMCID: 5861124
PMID: 29559729
DOI: 10.1038/s41598-018-22502-7

[…] matches the prediction of the more complicated model., as a proof-of-principle demonstration of this idea, consider the results shown in fig.  showing monte carlo estimates of j computed within the cgdna model. this model takes as input the n-basepair dna sequence and outputs an intrinsic shape within a rigid-base model and a (12n − 6) × (12n − 6) stiffness matrix, whose nonzero entries involve […]

PMCID: 3871698
PMID: 24376771
DOI: 10.1371/journal.pone.0083909

[…] subunit of bacteria and archaea, 13 ml media samples were collected every week from bioreactor outflows, centrifuged and pellets were stored at −80°c until analysis. total community genomic dna (cgdna) was extracted using the powersoil™ dna isolation kit (mo bio labs, inc., carlsbad, ca). separate sets of primers targeting the v1-3 hyper variable regions of the ssu rrna subunit of bacteria […]

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cgDNA institution(s)
Section de Mathématiques, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland

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