Tool stats & trends
Looking to identify usage trends or leading experts?
|Alternative name||Center for Genome Dynamics Single Nucleotide Polymorphism Database|
|Restrictions to use||None|
|Database management system||MySQL|
|User data submission||Not allowed|
Publication for Center for Genome Dynamics Single Nucleotide Polymorphism Database
Specific Dysregulation of IFNγ Production by Natural Killer Cells Confers Susceptibility to Viral Infection
[…] th the A and BcA9 strains (). We then removed variants found in public databases (http://www.sanger.ac.uk/cgi-bin/modelorgs/mousegenomes/snps.pl, http://www.informatics.jax.org/and http://cgd.jax.org/cgdsnpdb/) shared between A and C3H, DBA/2 or 129S1 strains, as NK cells from these strains do not show a defect in IFNγ production ( and ). This left 11 coding variations affecting 8 genes mapping mo […]
Deletion of an X Inactivation Boundary Disrupts Adjacent Gene Silencing
[…] ncated transgenic lines surviving initial drug selection lack genomic sequences at the distal XCI boundary. Informative SNPs to delimit these transgene breakpoints were identified (http://cgd.jax.org/cgdsnpdb) and are listed in . Allelic ratios were evaluated using a quantitative primer extension assay, qSNaPshot , . Samples were run on an ABI 3130XL sequencer and peak heights measured using GeneM […]
Pla2g12b and Hpn Are Genes Identified by Mouse ENU Mutagenesis That Affect HDL Cholesterol
[…] orm extraction, and genotyped by KBiosciences, Herts, UK for 58 (Hlb218) and 61 (Hlb320) single-nucleotide markers (polymorphic between B6 and C57L) that cover the complete genome (http://cgd.jax.org/cgdsnpdb). Linkage analysis was performed using interval mapping methods specific for a binary trait within the R/QTL package (R version 2.8.0, qtl version 1.09–43). Mice that exhibited plasma HDL cho […]
Looking to check out a full list of citations?
Be the first to review CGDSNPdb