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CGDSNPdb specifications

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Unique identifier OMICS_21008
Name CGDSNPdb
Alternative name Center for Genome Dynamics Single Nucleotide Polymorphism Database
Restrictions to use None
Database management system MySQL
Community driven No
Data access Browse
User data submission Not allowed
Version 1.0
Maintained No

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Publication for Center for Genome Dynamics Single Nucleotide Polymorphism Database

CGDSNPdb citations

 (3)
library_books

Specific Dysregulation of IFNγ Production by Natural Killer Cells Confers Susceptibility to Viral Infection

2014
PLoS Pathog
PMCID: 4256466
PMID: 25473962
DOI: 10.1371/journal.ppat.1004511

[…] th the A and BcA9 strains (). We then removed variants found in public databases (http://www.sanger.ac.uk/cgi-bin/modelorgs/mousegenomes/snps.pl, http://www.informatics.jax.org/and http://cgd.jax.org/cgdsnpdb/) shared between A and C3H, DBA/2 or 129S1 strains, as NK cells from these strains do not show a defect in IFNγ production ( and ). This left 11 coding variations affecting 8 genes mapping mo […]

library_books

Deletion of an X Inactivation Boundary Disrupts Adjacent Gene Silencing

2013
PLoS Genet
PMCID: 3836711
PMID: 24278033
DOI: 10.1371/journal.pgen.1003952

[…] ncated transgenic lines surviving initial drug selection lack genomic sequences at the distal XCI boundary. Informative SNPs to delimit these transgene breakpoints were identified (http://cgd.jax.org/cgdsnpdb) and are listed in . Allelic ratios were evaluated using a quantitative primer extension assay, qSNaPshot , . Samples were run on an ABI 3130XL sequencer and peak heights measured using GeneM […]

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Pla2g12b and Hpn Are Genes Identified by Mouse ENU Mutagenesis That Affect HDL Cholesterol

2012
PLoS One
PMCID: 3422231
PMID: 22912808
DOI: 10.1371/journal.pone.0043139

[…] orm extraction, and genotyped by KBiosciences, Herts, UK for 58 (Hlb218) and 61 (Hlb320) single-nucleotide markers (polymorphic between B6 and C57L) that cover the complete genome (http://cgd.jax.org/cgdsnpdb). Linkage analysis was performed using interval mapping methods specific for a binary trait within the R/QTL package (R version 2.8.0, qtl version 1.09–43). Mice that exhibited plasma HDL cho […]


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CGDSNPdb institution(s)
Center for Genome Dynamics, The Jackson Laboratory, Bar Harbor, ME, USA; Department of Genetics, School of Medicine, University of North Carolina, Chapel Hill, NC, USA
CGDSNPdb funding source(s)
Supported by National Centers for Systems Biology program grant GM-076468 from the National Institute of General Medical Sciences.

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