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CGED specifications

Information


Unique identifier OMICS_04503
Name CGED
Alternative name Cancer Gene Expression Database
Restrictions to use None
Maintained No

Taxon


  • Primates
    • Homo sapiens

Publication for Cancer Gene Expression Database

CGED citations

 (4)
library_books

Combined effects of PLK1 and RAS in hepatocellular carcinoma reveal rigosertib as promising novel therapeutic “dual hit” option

2017
Oncotarget
PMCID: 5790486
PMID: 29423069
DOI: 10.18632/oncotarget.23188

[…] in total) as described [, ]. Oncomine™ cancer microarray database analysis for gene expressions was performed using the website (https://www.oncomine.org/). The “SurvExpress-Biomarker validation for cancer gene expression” database (http://bioinformatica.mty.itesm.mx:8080/Biomatec/SurvivaX. jsp), was used for analysis of a hepatocellular carcinoma TCGA dataset as described []. […]

library_books

Integrative Genomic Analysis Identifies That SERPINA6 rs1998056 Regulated by FOXA/ERα Is Associated with Female Hepatocellular Carcinoma

2014
PLoS One
PMCID: 4157870
PMID: 25198130
DOI: 10.1371/journal.pone.0107246

[…] gulatory element and probably modifies the transcriptional level of SERPINA6 in liver. Moreover, LiverAtlas database (http://liveratlas.hupo.org.cn/) shows that SERPINA6 is a HCC significant gene and Cancer Gene Expression Database (CGED) (http://lifesciencedb.jp/cged/) suggests that this gene significantly differently expresses in HCC comparing with non-tumor liver tissues, which suggest a potent […]

library_books

Identification and Characterization of Cancer Mutations in Japanese Lung Adenocarcinoma without Sequencing of Normal Tissue Counterparts

2013
PLoS One
PMCID: 3772023
PMID: 24069199
DOI: 10.1371/journal.pone.0073484

[…] or the Rho family of GTPases and the DH/PH domains are indispensable for nucleotide exchange of GTPases and its regulation [-]. In addition, we analyzed the expression patterns of these genes using a cancer gene expression database, GeneLogic (Figure S3 in ). Expression levels of PREX1 and PREX2 were not enhanced in lung adenocarcinoma but were enhanced in wide variety of cancers, which is partly […]

library_books

Classification of Lung Cancer Tumors Based on Structural and Physicochemical Properties of Proteins by Bioinformatics Models

2012
PLoS One
PMCID: 3400626
PMID: 22829872
DOI: 10.1371/journal.pone.0040017

[…] e result, this work supports the promise of ANN analysis of DNA methylation data as a powerful approach for the development of automated methods for lung cancer classification . In another study lung cancer gene expression database analysis incorporated prior knowledge with support vector machine-based classification method, together with the application of support vector machine as the discrimina […]

Citations

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CGED institution(s)
Osaka Medical Center for Cancer and Cardiovascular Diseases, Higashinari-ku, Osaka, Japan

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