CGH-Explorer statistics

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Citations per year

Number of citations per year for the bioinformatics software tool CGH-Explorer
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Tool usage distribution map

This map represents all the scientific publications referring to CGH-Explorer per scientific context
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CGH-Explorer specifications

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Unique identifier OMICS_02054
Name CGH-Explorer
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

CGH-Explorer citations

 (3)
library_books

The landscape of chromosomal aberrations in breast cancer mouse models reveals driver specific routes to tumorigenesis

2016
Nat Commun
PMCID: 4932194
PMID: 27374210
DOI: 10.1038/ncomms12160

[…] To detect recurrent CNAs, the lists of segmented CNAs (CGH-Explorer output) for all studies within each GEMM were united and matched to the mouse chromosomal cytobands obtained from Ensembl 67 Archive for Mus musculus mm9 (May 2012). Each cytoband was ass […]

library_books

Hepatic Lipid Accumulation Alters Global Histone H3 Lysine 9 and 4 Trimethylation in the Peroxisome Proliferator Activated Receptor Alpha Network

2012
PLoS One
PMCID: 3433434
PMID: 22973438
DOI: 10.1371/journal.pone.0044345

[…] ion and selected targets whose expression was greater than 1.5-fold of the control in at least one histone trimethylation status. Chromosomal distribution of trimethylated targets was visualized with CGH explorer (http://www.ifi.uio.no/forskning/grupper/bioinf/Papers/CGH/). Probe name (Agilent ID) and corresponding chromosome, start position, GenBank accession number, and mean log2 values were imp […]

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Enhanced RAD21 cohesin expression confers poor prognosis in BRCA2 and BRCAX, but not BRCA1 familial breast cancers

2012
PMCID: 3446404
PMID: 22537934
DOI: 10.1186/bcr3176

[…] umber was determined by using SNP-CGH data for 34 tumors. All data were imported and visualized in Beadstudio v3.2. The logR ratio was used to perform frequency plots of genomic gain or loss by using CGH explorer []. R was used to perform SOMATICS [] to identify regions containing genomic aberrations. The copy number of RAD21 in each tumor was inferred from the average logR value of 22 single-nucl […]


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