CGHAnalyzer specifications

Information


Unique identifier OMICS_10239
Name CGHAnalyzer
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Advanced
Stability No
Maintained No

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Publications for CGHAnalyzer

CGHAnalyzer in publications

 (3)
PMCID: 1555617
PMID: 16848887
DOI: 10.1186/1471-2105-7-348

[…] the advantage of being fully scriptable and easy to embed in a workflow, but has the disadvantage of being less useful as a platform for data exploration. other applications, such as seegh [], and cghanalyzer [], are designed for viewing dual channel array data derived from comparative genomic hybridization studies. chromoviz [] is implemented as an r package for visualizing genomic data. […]

PMCID: 1410746
PMID: 16457699
DOI: 10.1186/bcr1356

[…] therefore, a total of six measurements determine the relative dna copy number of each bac clone in the test sample relative to the reference sample., data were normalized and visualized using cghanalyzer [], which is available for download from cghclonedb []. copy number deviations from diploid were determined by bacs with irs that differed significantly from a normal distribution […]

PMCID: 1181623
PMID: 15953389
DOI: 10.1186/1471-2105-6-146

[…] detection should make use of both array cgh and gene expression data, and allow easy examination of overlaps in the corresponding data sets., existing visualization tools include caryoscope [], cghanalyzer [], java treeview's karyoscope [], and seecgh []. all of these were developed specifically for the analysis of array cgh data and with the exception of cghanalyzer, none allow convenient […]


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CGHAnalyzer institution(s)
Abramson Family Cancer Research Institute, University of Pennsylvania, Philadelphia, PA, USA

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