CGHcall pipeline

CGHcall specifications


Unique identifier OMICS_00709
Name CGHcall
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes


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Publication for CGHcall

CGHcall citation

PMCID: 2698908

[…] per spotted sub-array by subtraction of the median value of all bac clones spotted within that sub-array. segmentation and subsequent calling of gained, amplified and lost regions was done using cghcall, an automated calling algorithm. segments with a probability score of ≥ 0.5 were considered gained, amplified or lost [15]., we used the cghregions algorithm to reduce our dataset […]

CGHcall institution(s)
Department of Pathology, VU University Medical Center, Amsterdam, Netherlands

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