CGHcall specifications

Information

Unique identifier	OMICS_00709
Name	CGHcall
Software type	Package/Module
Interface	Command line interface
Restrictions to use	None
Operating system	Unix/Linux, Mac OS, Windows
Programming languages	R
License	GNU General Public License version 2.0
Computer skills	Advanced
Stability	Stable
Maintained	Yes

Versioning

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Documentation

Documentation: http://www.bioconductor.org/packages/2.12/bioc/manuals/CGHcall/man/CGHcall.pdf

Publication for CGHcall

CGHcall: calling aberrations for array CGH tumor profiles.

2007 Bioinformatics

PMID: 17267432

CGHcall citation

Genomic profiling identifies common HPV-associated chromosomal alterations in squamous cell carcinomas of cervix and head and neck

2009

PMCID: 2698908

[…] per spotted sub-array by subtraction of the median value of all bac clones spotted within that sub-array. segmentation and subsequent calling of gained, amplified and lost regions was done using cghcall, an automated calling algorithm. segments with a probability score of ≥ 0.5 were considered gained, amplified or lost [15]., we used the cghregions algorithm to reduce our dataset […]

CGHcall institution(s)

Department of Pathology, VU University Medical Center, Amsterdam, Netherlands

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