CGHPRO statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

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Associated diseases

Associated diseases

CGHPRO specifications

Information


Unique identifier OMICS_00711
Name CGHPRO
Software type Application/Script, Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java, R
License GNU General Public License version 3.0
Computer skills Medium
Stability Stable
Requirements
MySQL database
Maintained Yes

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Maintainers


  • person_outline Reinhard Ullmann <>
  • person_outline Katrin Tebel <>
  • person_outline Fikret Erdogan <>
  • person_outline Hilger Ropers <>

Publication for CGHPRO

CGHPRO in publications

 (3)
PMCID: 4967518
PMID: 27478502
DOI: 10.1186/s13039-016-0264-6

[…] were done according to the manufacturer's recommendations for array cgh experiments (agilent). further analysis and visualization of array painting data was done using the array cgh software package cghpro []., dna sequencing of all protein coding exons and splice junctions was performed on 51 mrkh patients for 4 exons in trim71 (nm_001039111.2) and 19 exons in cnot10 (nm_015442.2) at the 3p22.3 […]

PMCID: 3529307
PMID: 23269912
DOI: 10.3389/fnins.2012.00187

[…] showed that the same gene, comt, was also hypomethylated (nohesara et al., )., moreover, in the study done by kirov et al. () cnvs in sz were analyzed by comparative genome hybridization using the cghpro, software for the analysis, and visualization of array cgh data. results showed that deletion at the loci of nrxn1, a neuronal cell adhesion molecule that modulates the recruitment of nmda […]

PMCID: 2648774
PMID: 19208175
DOI: 10.1186/1471-2105-10-S1-S70

[…] additionally, unsupervised hidden markov models approach [] and circular binary segmentation [] have been used for identifying the alterations in the copy numbers of genes. thus, a widely-used tool cghpro provides both of them with several additional smoothing possibilities for analyzing the cgh data []. there are not many options to analyze and illustrate the copy number and expression data […]


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CGHPRO institution(s)
Max-Planck Institute for Molecular Genetics, Berlin, Germany
CGHPRO funding source(s)
Supported by the Nationales Genomforschungsnetzwerk, grant 01GR0203.

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