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CGHregions | Dimension reduction for array CGH data with minimal information loss

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Reduces the dimension of array Comparative Genomic Hybridization (CGH) data while assuring the loss of information. CGHregions is an algorithm implemented using R. It was shown that using the regions resulting from CGHregions instead of separate clones may lead to statistically rigorous findings, even for relatively small sample sizes.

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CGHregions forum

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CGHregions classification

CGHregions specifications

Unique identifier:
OMICS_02058
Interface:
Command line interface
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 2.0
Version:
1.35.0
Requirements:
methods, Biobase, CGHbase
Software type:
Package/Module
Restrictions to use:
None
Programming languages:
R
Computer skills:
Advanced
Stability:
Beta
Maintained:
Yes

CGHregions distribution

versioning

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CGHregions support

Documentation

Maintainers

  • Mark van de Wiel <>
  • Sjoerd Vosse <>

Credits

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Publications

Institution(s)

Department of Pathology and Department of Biostatistics (KEB), VU University Medical Center, Amsterdam, Netherlands; Department of Mathematics, Vrije Universiteit, Amsterdam, Netherlands

Funding source(s)

Partly supported by the Center for Medical Systems Biology (CMSB) es tablished by the Netherlands Genomics Initiative/Netherlands Organization for Scientific Research (NGI/NWO).

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