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CGHweb

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A web-based tool that applies a number of popular algorithms to a single array CGH profile entered by the user. CGHweb generates a heatmap panel of the segmented profiles for each method as well as a consensus profile. The clickable heatmap can be moved along the chromosome and zoomed in or out. It also displays the time that each algorithm took and provides numerical values of the segmented profiles for download. The web interface calls algorithms written in the statistical language R.

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CGHweb classification

CGHweb specifications

Interface:
Web user interface
Programming languages:
R
Stability:
Stable
Restrictions to use:
None
Computer skills:
Basic
Maintained:
Yes

CGHweb distribution

Credits

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Publications

Institution(s)

Harvard-Partners Center for Genetics and Genomics, Boston, MA, USA; Informatics Program, Children’s Hospital, Boston, MA, USA

Funding source(s)

This work was funded by NIH through the Cancer Genome Characterization Center grant (1U24 CA126554).

Link to literature

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