CGmapTools specifications

Unique identifier:
OMICS_20744
Interface:
Command line interface
Input data:
Alignment result, DNA methylome
Output data:
figures, mate-analysis result
Biological technology:
Illumina
Programming languages:
C, C++, Perl, Python, R
Computer skills:
Advanced
Stability:
Beta
High performance computing:
No
Registration required:
No
Availability:
Yes
Software type:
Toolkit/Suite
Restrictions to use:
Academic or non-commercial use
Input format:
BAM, CGmap, ATCGmap
Output format:
PNG, PDF, XLS
Operating system:
Unix/Linux, Mac OS
License:
MIT License
Version:
0.0.3
Source code URL:
https://codeload.github.com/guoweilong/cgmaptools/tar.gz/v0.0.3b
Free trial:
Yes
Maintained:
Yes
  • Animals
  • Archaebacteria
  • Eubacteria
  • Fungi
  • Plants
  • Viruses

versioning

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No versioning.

CGmapTools distribution

download

CGmapTools support

Maintainer

Additional information

https://cgmaptools.github.io/cgmaptools_documentation/what-is-cgmaptools.html

forum

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Credits

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Publications

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2 user reviews

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2 user reviews

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BS-Seeker2's avatar image

BS-Seeker2

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CGmapTools provides seamless tools for downstream analysis of BS-Seeker2.
It can also accept BAM files generated by BS-Seeker2 and Bismark.

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Weilong Guo

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CGmapTools is a command-line package, can be available for SNV calling analysis, Allele-specific methylation analysis, coverage analysis, differentially methylation analysis, and bin-wise, region-wise, chromosome-wise, and context-wise DNA methylation analysis.
It also designed binary CGbz format to improve storage and accessing large DNA methylome data.
CGmapTools also support lots of figure generations.