cGRNB statistics

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Citations per year

Number of citations per year for the bioinformatics software tool cGRNB
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Tool usage distribution map

This map represents all the scientific publications referring to cGRNB per scientific context
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cGRNB specifications

Information


Unique identifier OMICS_11970
Name cGRNB
Alternative name combinatorial Gene Regulatory Networks Builder
Interface Web user interface
Restrictions to use None
Programming languages PHP, R
Computer skills Basic
Stability No
Maintained No

Maintainer


This tool is not available anymore.

Information


Unique identifier OMICS_11970
Name cGRNB
Alternative name combinatorial Gene Regulatory Networks Builder
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability No
Maintained No

Versioning


No version available

Maintainer


This tool is not available anymore.

Publications for combinatorial Gene Regulatory Networks Builder

cGRNB citations

 (3)
library_books

Screening of biomarkers for prediction of response to and prognosis after chemotherapy for breast cancers

2016
PMCID: 4861001
PMID: 27217777
DOI: 10.2147/OTT.S92350

[…] on factors that significantly regulate the DCGs according to the Targets Enrichment Density (TED) and Targets DCL Density (TDD) scores. The human gene regulatory relationships were collected from the cGRNB (combinatorial Gene Regulatory Networks Builder; http://www.scbit.org/cgrnb/) database, which contains 214 transcription factors and 16,831 target genes to form 210,637 pairs of regulatory relat […]

library_books

Integrative Analysis of Transcriptional Regulatory Network and Copy Number Variation in Intrahepatic Cholangiocarcinoma

2014
PLoS One
PMCID: 4045758
PMID: 24897108
DOI: 10.1371/journal.pone.0098653

[…] reverse combined engineering () method to construct ICC-specific TRN (ICC-TRN). Sequence-based TF-gene pairs were downloaded from our web platform for building combinatorial Gene Regulation Networks (cGRNB, http://www.scbit.org/cgrnb/), which defines TF-gene pair as that TF's binding site should be located between upstream 1 kb and downstream 0.5 kb of transcription start sites . 203633 TF-gene pa […]

library_books

Computational systems biology in the big data era

2013
BMC Syst Biol
PMCID: 3852012
PMID: 24564834
DOI: 10.1186/1752-0509-7-S2-S1

[…] (http://doc.aporc.org/wiki/Corbi) and are freely accessible. The computational experiments on the simulated and real data show that their methods get the best accuracy. Huayong Xu et al. released the cGRNB (combinatorial Gene Regulatory Networks Builder): a web server for building combinatorial gene regulatory networks through integrated engineering of seed-matching sequence information and gene e […]


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cGRNB institution(s)
School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanhgai, China; Shanghai Center for Bioinformation Technology, Shanghai, China; Key Lab of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China
cGRNB funding source(s)
The National key basic research program (funding numbers: 2011CB910204, 2012CB316501, 2011CB910200, 2010CB912702); Chinese Academy of Sciences (Innovation funding KSCX2-YW-R-112, KSCX2-EW-R-04); National Natural Science Foundation of China (31000380, 60970050, 31171268, 90913009)

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