CGWB statistics

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Citations per year

Number of citations per year for the bioinformatics software tool CGWB
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Tool usage distribution map

This map represents all the scientific publications referring to CGWB per scientific context
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Associated diseases

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Popular tool citations

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CGWB specifications

Information


Unique identifier OMICS_26867
Name CGWB
Alternative name Cancer Genome Workbench
Interface Web user interface
Restrictions to use None
Computer skills Basic
Maintained No

Documentation


Maintainer


This tool is not available anymore.

Publication for Cancer Genome Workbench

CGWB citations

 (3)
library_books

Databases and Web Tools for Cancer Genomics Study

2015
PMCID: 4411507
PMID: 25707591
DOI: 10.1016/j.gpb.2015.01.005

[…] The Cancer Genome Work Bench (CGWB) is an effective tool with a focus on gene expression and mutations, CNV, and methylation . It provides an automated analysis pipeline for users to visualize and analyze genomic information and g […]

library_books

The Cancer Genome Atlas (TCGA): an immeasurable source of knowledge

2015
PMCID: 4322527
PMID: 25691825
DOI: 10.5114/wo.2014.47136

[…] tcgabatcheffects) is a website that enables scientists to identify and quantify the batch effects accompanying TCGA data set, currently according to hierarchical clustering and enhanced PCA plots []. Cancer Genome Workbench, CGWB (https://cgwb.nci.nih.gov/), is an application developed by the NCI to integrate and display sample-level genomic and transcription alterations in various cancers, from d […]

library_books

Discovery Analysis of TCGA Data Reveals Association between Germline Genotype and Survival in Ovarian Cancer Patients

2013
PLoS One
PMCID: 3605427
PMID: 23555554
DOI: 10.1371/journal.pone.0055037

[…] s in the majority of samples).It should be noted that not all the genomic regions contributing to these data have unique sequences. To assess this, we used the “mapability” criteria as implemented in CGWB : for each locus under consideration, we consider a sliding 75 base-pair window containing that locus and attempt to match it to other regions in the genome; the locus is flagged as unique if, fo […]


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CGWB institution(s)
Laboratory of Population Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA; Division of Pulmonary and Critical Care Medicine, Department of Internal Medicine, Wonkwang University Hospital, Cheonbuk, Korea

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