CGWB statistics

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Citations per year

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Protocols

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CGWB specifications

Information


Unique identifier OMICS_26867
Name CGWB
Alternative name Cancer Genome Workbench
Interface Web user interface
Restrictions to use None
Computer skills Basic
Maintained No

Documentation


Maintainer


This tool is not available anymore.

Publication for Cancer Genome Workbench

CGWB in pipeline

2013
PMCID: 3605427
PMID: 23555554
DOI: 10.1371/journal.pone.0055037

[…] the majority of samples)., it should be noted that not all the genomic regions contributing to these data have unique sequences. to assess this, we used the “mapability” criteria as implemented in cgwb : for each locus under consideration, we consider a sliding 75 base-pair window containing that locus and attempt to match it to other regions in the genome; the locus is flagged as unique if, […]


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CGWB in publications

 (5)
PMCID: 4667703
PMID: 26468775
DOI: 10.1038/ncomms9640

[…] biological effects and targets of mir-582-3p in nsclc and other cancer types remains important. in addition, data regarding dna copy number variations (cnvs), which are available from the ucsc cancer genome workbench ( https://cgwb.nci.nih.gov/), indicate that the mir582 gene locus is frequently amplified in 34 of 80 lung cancer cell lines in the gsk data set and in 21 samples […]

PMCID: 4411507
PMID: 25707591
DOI: 10.1016/j.gpb.2015.01.005

[…] experiments on 71,870 samples, most of which are from large-scale international cancer projects including tcga, ccle, and the stand up to cancer initiative., the cancer genome work bench (cgwb) is an effective tool with a focus on gene expression and mutations, cnv, and methylation . it provides an automated analysis pipeline for users to visualize and analyze genomic information […]

PMCID: 3701070
PMID: 23844038
DOI: 10.1371/journal.pone.0067583

[…] (pten in gct cells, pi3k in rko cells, and p53 in a673 cells) that were confirmed by in-house sequencing. full sequencing data for these and other cell lines used in this study can be found at the cancer genome workbench (cgwb) portal of the nci (https://cgwb.nci.nih.gov/). overexpression of proteins capable of driving cell growth/survival, or upregulation of efflux pump(s) could also serve […]

PMCID: 3706894
PMID: 23363777
DOI: 10.1186/gm413

[…] integrative genomics viewer, cytoscape, savant genome browser, stratomex and platforms such as cbio cancer genomics portal, intogen, the ucsc cancer genomics browser, the regulome explorer and the cancer genome workbench., cancer genomics benefits from high-throughput technologies that allow the comparison of the genomic sequences, epigenomic profiles, and transcriptomes of tumor cells […]

PMCID: 3351145
PMID: 22262733
DOI: 10.1093/nar/gkr1265

[…] database (), coxpresdb for gene networks in mammals (), cyclonet for cell cycle regulation (), hcnet for heart and calcium functional network (), and general cancer databases [oncomine () and cancer genome workbench (cgwb) ()]. of these, oncomine has been used and cited widely in cancer research particularly when only a few targeted genes are scrutinized. while the statistical methods […]


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CGWB institution(s)
Laboratory of Population Genetics, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA; Division of Pulmonary and Critical Care Medicine, Department of Internal Medicine, Wonkwang University Hospital, Cheonbuk, Korea

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