ChainRank specifications

Information


Unique identifier OMICS_12274
Name ChainRank
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Ákos Tényi

Publication for ChainRank

ChainRank citation

library_books

Systems Medicine: from molecular features and models to the clinic in COPD

2014
J Transl Med
PMCID: 4255907
PMID: 25471042
DOI: 10.1186/1479-5876-12-S2-S4

[…] s' muscle. In order to identify the sub-network(s) linking immune and bioenergetics genes to ROS-associated genes (from [23;24]) in the context of COPD we developed a chain-based methodology [] named ChainRank. Briefly, the methodology identifies relevant sub-networks by identifying and scoring chains of interactions that link specific targets. The type of interactions to include in the chain sear […]

ChainRank institution(s)
Hospital Clínic-Institut d’Investigacions Biomediques August Pi i Sunyer (IDIBAPS), Research Institute, Universitat de Barcelona, Barcelona, Spain; Departament de Bioquimica i Biologia Molecular, Facultat de Biologia-IBUB, Universitat de Barcelona, Barcelona, Spain; Unit of computational Medicine, Center for Molecular Medicine, Department of Medicine, Karolinska Institute and Karolinska University Hospital, Stockholm, Sweden; Centro de Investigación en Red de Enfermedades Respiratorias (CibeRes), Palma de Mallorca, Spain; Integrative Systems Biology, University of Liverpool, Liverpool, UK; Biomax Informatics AG, Planegg, Germany
ChainRank funding source(s)
This research was supported by the Spanish Government and FEDER Funds SAF2011-25726, the AGAUR (2009SGR911 and 2009SGR-1308), the European Commission (FP7) grants SYNERGY-COPD (no. FP7-ICT-2009-270086) and METAFLUX (PITN-GA-2010-264780) and the Icrea Academia award.

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