ChAMP specifications

Unique identifier:
OMICS_01796
Interface:
Command line interface, Graphical user interface
Biological technology:
Illumina
Programming languages:
R
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Software type:
Package/Module
Restrictions to use:
None
Operating system:
Unix/Linux, Mac OS, Windows
License:
GNU General Public License version 3.0, GNU General Public License version 2.0
Version:
2.8.9
Requirements:
minfi, ChAMPdata, FEM, DMRcate, Illumina450ProbeVariants.db, IlluminaHumanMethylationEPICmanifest

Subtools

  • Probe Lasso

versioning

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ChAMP distribution

download

ChAMP support

Documentation

Maintainers

  • Andrew Teschendorff <>
  • Stephan Beck <>
  • Tiffany Morris <>
  • Andrew Feber <>

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Publications

Institution(s)

CAS Key Lab of Computational Biology, CAS-MPG Partner Institute for Computational Biology, Shanghai Institute for Biological Sciences, Chinese Academy of Sciences, Shanghai, China; Medical Genomics Group, Paul O’Gorman Building, UCL Cancer Insitute, University College London, London, UK; Cambridge Epigenetix, Jonas Webb Building, Babraham Campus, Cambridge, UK; Statistical Genomics, UCL Cancer Institute, University College London, London, UK; Department of Women’s Cancer, University College London, London, UK

Funding source(s)

Supported by the Royal Society and Chinese Academy of Sciences (Newton Advanced Fellowship 164914), Chinese Scholarship Council (CSC), the MRC (MR/M025411/1) and the UCLH/UCL Comprehensive Biomedical Research Centre and grant NIHR-BTRU-2014-10074 from the National Institute for Health Research (NIHR) Blood & Transplant Research Unit (BTRU).

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