ChAsE specifications

Information


Unique identifier OMICS_12440
Name ChAsE
Alternative name Chromatin Analysis and Exploration
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Input data The input dialog allows users to specify one or more marks as genome-wide read density data files (in Wig or bigWig formats) and a single region set containing genomic intervals of interest, such as regions around transcription start sites (in GFF or BED formats).
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Stability Stable
Maintained Yes

Versioning


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Documentation


Maintainer


  • person_outline Mohammad Karimi <>

Publication for Chromatin Analysis and Exploration

ChAsE institution(s)
Graphics Usability and Visualization Lab, Simon Fraser University, Burnaby, BC, Canada; Canada’s Michael Smith Genome Sciences Centre, Vancouver, BC, Canada; Department of Pathology and Laboratory Medicine, University of British Columbia, Vancouver, BC, Canada; Department of Molecular Oncology, BC Cancer Agency, BC, Canada; Department of Medical Genetics, Life Sciences Institute, University of British Columbia, Vancouver, BC, Canada; Department of Molecular Biology and Biochemistry, Simon Fraser University, Burnaby, BC, Canada; Biomedical Research Centre, University of British Columbia, Vancouver, BC, Canada; Visualization and Data Analysis Lab, Faculty of Computer Science, University of Vienna, Vienna, Austria

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