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ChemDes specifications

Information


Unique identifier OMICS_12100
Name ChemDes
Interface Web user interface
Restrictions to use None
Programming languages Java, Javascript, Python
Computer skills Basic
Version 15.11.11
Stability Stable
Requirements
HTML5
Maintained Yes

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Maintainer


  • person_outline Wen Bin Zeng

Publication for ChemDes

ChemDes citations

 (3)
library_books

In Silico Prediction of Chemical Toxicity for Drug Design Using Machine Learning Methods and Structural Alerts

2018
PMCID: 5826228
PMID: 29515993
DOI: 10.3389/fchem.2018.00030

[…] toolkits such as padel-descriptor (yap, ), openbabel (o'boyle et al., ), cdkit (steinbeck et al., ), rdkit (landrum, ), or web servers like e-dragon (tetko et al., ), chembcpp (dong et al., ), and chemdes (dong et al., ). using numeric features may result in overfitting when the size of training set is small (xue et al., ). hence, feature selection should be done before model building, […]

library_books

Multi Target Screening and Experimental Validation of Natural Products from Selaginella Plants against Alzheimer's Disease

2017
Front Pharmacol
PMCID: 5574911
PMID: 28890698
DOI: 10.3389/fphar.2017.00539

[…] the model (cao et al., ,; yun et al., ). rfs were trained using the rf library in the statistical computing environment, r. all the fingerprints were calculated by some tools developed by our group: chemdes, biotriangle webserver and chemopy package (cao et al., ; dong et al., , ). to improve the prediction ability of the sar model, we assembled all fingerprint models to obtain the consensus […]

library_books

Dataset of curcumin derivatives for QSAR modeling of anti cancer against P388 cell line

2016
PMCID: 5061127
PMID: 27752528
DOI: 10.1016/j.dib.2016.09.036

[…] dataset were sketched using chemdraw 6.0 software and converted using chembio 3d ultra and then followed by energy minimization using mm2 force field ., molecular descriptors were generated using chemdes software package for each compound for then these descriptors were reduced to a set of descriptors which is as small as possible but are rich information. correlation matrix was then applied […]


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ChemDes institution(s)
School of Pharmaceutical Sciences, Central South University, Changsha, China; Department of Biostatistics, School of Public Health, University of Texas Health Science Center at Houston, Houston, USA; Xiangya Hospital, Central South University, Changsha, China; College of Chemistry and Chemical Engineering, Central South University, Changsha, China; Institute of Advancing Translational Medicine in Bone & Joint Diseases, School of Chinese Medicine, Hong Kong Baptist University, Kowloon Tong, Hong Kong People's China
ChemDes funding source(s)
This work is financially supported by grants from the Project of Innovationdriven Plan in Central South University, the National Natural Science Founda tion of China (Grants No. 81402853), and the Postdoctoral Science Foundation of Central South University, the Chinese Postdoctoral Science Foundation (2014T70794, 2014M562142).

ChemDes reviews

 (2)
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changfulu's avatar image No country

changfulu

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Web
A good platform that can be used to calculate different types of molecular descriptors and fingerprints. So far it is the most comprehensive tool.
Zhijiang Yao's avatar image

Zhijiang Yao

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Web
It's a useful web server.