While many tools exist that run enrichment analysis for protein sets annotated with the Gene Ontology, there are only a few that can be used for small molecules enrichment analysis. Source text: Moreno et al., 2015.
Web app
Metabolite Biological… Metabolite Biological Role

MBRole Metabolite Biological Role

Performs overrepresentation (enrichment) analysis of categorical annotations…

Performs overrepresentation (enrichment) analysis of categorical annotations for a set of compounds of interest. These categorical annotations correspond to biological and chemical information…

Desktop app
Web app
Chemical annotation… Chemical annotation retrieval toolkit

CART Chemical annotation retrieval toolkit

A chemical annotation retrieval toolkit. As a key functionality, CART matches…

A chemical annotation retrieval toolkit. As a key functionality, CART matches an input list of chemical names into a comprehensive reference space to assign unambiguous chemical identifiers. In this…

Web app
BiNChE BiNChE

BiNChE

An enrichment analysis tool for small molecules based on the ChEBI Ontology.…

An enrichment analysis tool for small molecules based on the ChEBI Ontology. BiNChE displays an interactive graph that can be exported as a high-resolution image or in network formats. The tool…

Web app
Metabolite Pathway… Metabolite Pathway Enrichment Analysis

MPEA Metabolite Pathway Enrichment Analysis

A rapid tool for functional analysis and biological interpretation of metabolic…

A rapid tool for functional analysis and biological interpretation of metabolic profiling data. MPEA follows the concept of gene set enrichment analysis (GSEA) and tests whether metabolites involved…

Web app
Metabolite Set… Metabolite Set Enrichment Analysis

MSEA Metabolite Set Enrichment Analysis

A web-based tool to help identify and interpret patterns of metabolite…

A web-based tool to help identify and interpret patterns of metabolite concentration changes in a biologically meaningful context for human and mammalian metabolomic studies. Key to the development…

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