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ChemProt specifications


Unique identifier OMICS_02873
Name ChemProt
Restrictions to use None
Data access File download, Browse
Version 3.0
Maintained Yes


  • person_outline Olivier Taboureau

Publications for ChemProt

ChemProt citations


HIVprotI: an integrated web based platform for prediction and design of HIV proteins inhibitors

J Cheminform
PMCID: 5845081
PMID: 29524011
DOI: 10.1186/s13321-018-0266-y

[…] at the performance increased with the rise in the number and types of compounds (Table ). Moreover, there are certain online resources like PASS Online (, SuperPred [] and ChemProt server [] for deciphering the biological potential and targets of different chemical compounds using information of existing drugs, environmental chemicals and natural products databases. In […]


Predicting the Reliability of Drug target Interaction Predictions with Maximum Coverage of Target Space

Sci Rep
PMCID: 5476590
PMID: 28630414
DOI: 10.1038/s41598-017-04264-w

[…] its set of predicted targets. Each method adopts a particular model type: supervised learning (e.g. Naïve Bayes Classifier, , TAMOSIC, Kernel Classifiers), unsupervised learning (e.g. SEA, SuperPred, ChemProt-2.0) or structure-based (e.g. TarFisDock, INVDOCK, PharmMapper). On the other hand, ligand-centric methods are based on calculating the similarity of a very large number of target-annotated m […]


Discovery 2: an interactive resource for the rational selection and comparison of putative drug target proteins in malaria

Malar J
PMCID: 3637051
PMID: 23537208
DOI: 10.1186/1475-2875-12-116

[…] protein drug targets, especially when the targets of compounds such as the GSK dataset with known activity against the parasite may be extrapolated using protein-ligand interaction databases such as ChemProt [,]. The Discovery resource attempts to use a similar approach in associating chemical compounds with malaria proteins using sequence homology, and also selective chemical similarity searches […]


Ranking Transitive Chemical Disease Inferences Using Local Network Topology in the Comparative Toxicogenomics Database

PLoS One
PMCID: 3492369
PMID: 23144783
DOI: 10.1371/journal.pone.0046524

[…] umber of citations that report an interaction . However, in our experience, citation evidence does not always correlate well with the significance of a biological finding (e.g., new discoveries). The ChemProt database uses chemical-gene interactions, including those from CTD, to establish links between chemicals and diseases, but does not make novel inferences . DiseaseNet integrates networks of p […]


Identifying Novel Drug Indications through Automated Reasoning

PLoS One
PMCID: 3402456
PMID: 22911721
DOI: 10.1371/journal.pone.0040946

[…] es of concepts within abstracts tend to generate too many hypotheses. Another direction for network-based approaches aims to uncover knowledge through the creation of biological networks. STITCH and ChemProt are examples of network-based approaches that take interactions extracted from literature and integrates with data from biological knowledge bases to create chemical compound-protein interac […]


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ChemProt institution(s)
Department of Systems Biology, Center for Biological Sequence Analysis, Technical University of Denmark, Lyngby, Denmark; Department of Disease Systems Biology, Faculty of Health and Medical Sciences, Novo Nordisk Foundation, Center for Protein Research, University of Copenhagen, Copenhagen, Denmark; Translational Informatics Division, Department of Internal Medicine, University of New Mexico Health Sciences Center, NM, USA; INSERM, UMRS-973, MTi, Universite Paris Diderot, Paris, France

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