ChemTreeMap statistics

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Citations per year

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Popular tool citations

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Tool usage distribution map

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Associated diseases

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ChemTreeMap specifications


Unique identifier OMICS_18214
Name ChemTreeMap
Interface Web user interface
Restrictions to use None
Programming languages Javascript, Python
License Apache License version 2.0
Computer skills Basic
Stability Stable
Docker, Google Chrome or HTML5 web browser, RDKit, ETE2, GraphViz, RapidNJ
Source code URL
Maintained Yes



  • person_outline Heather A Carlson <>

Additional information

Publication for ChemTreeMap

ChemTreeMap in publications

PMCID: 5699844
PMID: 29125840
DOI: 10.1371/journal.pcbi.1005813

[…] shows a map of the chemical similarity based on ecfp6; the fingerprint was used to give a broader characterization of similarity rather than focusing on one property. the map was generated by chemtreemap which was developed in our lab []. van westen et al. suggested that allosteric modulators form a subset of non-allosteric modulators, based on the observation that their allosteric […]

PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] data and a list of potential biochemical transformations to infer metabolic networks. metamapr [] builds chemical and spectral similarity networks based on annotated and unknown compounds. chemtreemap [] uses annotated structures and a computational approach to produce hierarchical trees based on compound similarity to assist visualization of chemical overlap between molecular datasets […]

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ChemTreeMap institution(s)
Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA; Department of Medicinal Chemistry, University of Michigan, Ann Arbor, MI, USA
ChemTreeMap funding source(s)
This work was supported in part by the National Institutes of Health (U01GM086873).

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