ChIA-PET specifications


Unique identifier OMICS_12854
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages C++, R, Shell (Bash)
Computer skills Advanced
Version 2.0
Stability Stable
Requirements BWA, MACS2, samtools, bedtools, R, ggplot2, VGAM
Maintained Yes



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  • person_outline Guipeng Li <>

Publication for ChIA-PET

ChIA-PET institution(s)
MOE Key Laboratory of Bioinformatics, Tsinghua University, Beijing, China; Bioinformatics Division and Center for Synthetic & Systems Biology, TNLIST, Tsinghua University, Beijing, China; Department of Automation, Tsinghua University, Beijing, China; Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA; Department of Biological Sciences, Center for Systems Biology, University of Texas, Dallas, TX, USA
ChIA-PET funding source(s)
National Basic Research Program of China [2012CB316503]; National High Technology Research and Development Program of China [2012AA020401]; National Natural Science Foundation of China [91519326, 31361163004 and 31301044]; Tsinghua National Laboratory for Information Science and Technology Cross-discipline Foundation; National Institutes of Health grants [HG001696, 5U01HG007919-02, 5U54HG00699604 and 5P50HG00773502]

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