ChIA-PET specifications

Unique identifier:
OMICS_12854
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Software type:
Pipeline/Workflow
Restrictions to use:
None
Programming languages:
C++, R, Shell (Bash)
Version:
2.0
Requirements:
BWA, MACS2, samtools, bedtools, R, ggplot2, VGAM

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

ChIA-PET distribution

download

ChIA-PET support

Documentation

Maintainer

  • Guipeng Li <>

forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

MOE Key Laboratory of Bioinformatics, Tsinghua University, Beijing, China; Bioinformatics Division and Center for Synthetic & Systems Biology, TNLIST, Tsinghua University, Beijing, China; Department of Automation, Tsinghua University, Beijing, China; Department of Genetics, Stanford University School of Medicine, Stanford, CA, USA; Department of Biological Sciences, Center for Systems Biology, University of Texas, Dallas, TX, USA

Funding source(s)

National Basic Research Program of China [2012CB316503]; National High Technology Research and Development Program of China [2012AA020401]; National Natural Science Foundation of China [91519326, 31361163004 and 31301044]; Tsinghua National Laboratory for Information Science and Technology Cross-discipline Foundation; National Institutes of Health grants [HG001696, 5U01HG007919-02, 5U54HG00699604 and 5P50HG00773502]

User review

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.

Related Tools