CHIC specifications


Unique identifier OMICS_20400
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A reference sequence and some reads.
Input format multi-FASTA, FASTQ
Output data Some alignments.
Output format BAM
Operating system Unix/Linux
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes



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  • person_outline Veli Makinen <>
  • person_outline Daniel Valenzuela <>

Publication for CHIC

CHIC institution(s)
Helsinki Institute for Information Technology Department of Computer Science, University of Helsinki, Helsinki, Finland
CHIC funding source(s)
Supported by the Academy of Finland (grant 284598 for Center of Excellence in Cancer Genetics Research).

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