ChiLin specifications

Information


Unique identifier OMICS_15292
Name ChiLin
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux, Mac OS
Programming languages Python, R, Shell (Bash)
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Stability Stable
Requirements BWA, seqtk, fastqc, samtools, macs2, bedGraphToBigWig, wigCorrelate, bx-Python, mdseqpos
Source code URL https://codeload.github.com/cfce/chilin/zip/master
Maintained Yes

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Documentation


Maintainer


  • person_outline Liu Shirley <>

Publication for ChiLin

ChiLin institution(s)
Shanghai Key laboratory of tuberculosis, Shanghai Pulmonary Hospital, Shanghai, China; Department of Bioinformatics, School of Life Science and Technology, Tongji University, Shanghai, China; Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, MA, USA; Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute and Harvard School of Public Health, Boston, MA, USA; Department of Biochemistry, University at Buffalo, Buffalo, NY, USA; Division of Molecular and Cellular Oncology, Department of Medical Oncology, Dana-Farber Cancer Institute and Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, USA; Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, MA, USA
ChiLin funding source(s)
The project was funded by National Science Foundation of China (31329003), the National Institute of Health (U01 CA180980 and R01 HG4069), by the Dana-Farber Cancer Institute, by National Natural Science Foundation of China (31329003) and National Institutes of Health (CA180980).

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