Chimeraviz pipeline

Chimeraviz specifications

Information


Unique identifier OMICS_18499
Name Chimeraviz
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License Artistic License version 2.0
Computer skills Advanced
Version 1.0.2
Stability Stable
Requirements Biostrings, GenomicRanges, IRanges, Gviz, S4Vectors, ensembldb, AnnotationFilter
Maintained Yes

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Maintainers


  • person_outline Stian Lagstad <>
  • person_outline Rolf Skotheim <>

Publication for Chimeraviz

Chimeraviz citation

2017
PMCID: 5870674

[…] positive and important fusion transcripts., we would like to thank matteo benelli, author of ericscript, and roeland verhaak, author of prada, for providing example output data to be included in chimeraviz., this work has been supported by grants from the norwegian cancer society (pr-2007-0166), notur (project nn9313k), and the research council of norway through its centers of excellence […]

Chimeraviz institution(s)
Department of Molecular Oncology, Institute for Cancer Research, The Norwegian Radium Hospital, Oslo University Hospital, Oslo, Norway; Department of Informatics, Faculty of Mathematics and Natural Sciences, University of Oslo, Oslo, Norway; Centre for Cancer Biomedicine, Faculty of Medicine, University of Oslo, Oslo, Norway
Chimeraviz funding source(s)
Supported by grants from the Norwegian Cancer Society (PR- 2007-0166), Notur (project NN9313K), and the Research Council of Norway through its Centers of Excellence funding scheme (project number 179571).

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