ChimeRScope statistics

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Citations per year

Number of citations per year for the bioinformatics software tool ChimeRScope
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Tool usage distribution map

This map represents all the scientific publications referring to ChimeRScope per scientific context
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Associated diseases

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Popular tool citations

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ChimeRScope specifications

Information


Unique identifier OMICS_18276
Name ChimeRScope
Interface Web user interface
Restrictions to use None
Input data Some RNA sequences.
Input format FASTQ
Output format SVG
Programming languages Java
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Chittibabu Guda

Information


Unique identifier OMICS_18276
Name ChimeRScope
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Input data Some RNA sequences.
Input format FASTQ
Output format SVG
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Stability Stable
Maintained Yes

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Versioning


No version available

Documentation


Maintainer


  • person_outline Chittibabu Guda

Publication for ChimeRScope

ChimeRScope citation

library_books

Alignment free sequence comparison: benefits, applications, and tools

2017
Genome Biol
PMCID: 5627421
PMID: 28974235
DOI: 10.1186/s13059-017-1319-7

[…] manner. For example, MICADo analyzes third-generation sequencing reads for each patient sample within the context of the data of the whole cohort in order to capture patient-specific mutations [] and ChimeRScope predicts fusion transcripts with potential oncogenic functions, based on the k-mer profiles of the RNA-seq paired-end reads [].Conventional next-generation sequencing computation came of a […]


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ChimeRScope institution(s)
Department of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center, Omaha, NE, USA; The Sichuan Key Laboratory for Human Disease Gene Study, Clinical Laboratory Department, Sichuan Academy of Medical Sciences & Sichuan Provincial People’s Hospital, Chengdu, China; School of Medicine, University of Electronic Science and Technology, Chengdu, China; Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE, USA; Bioinformatics and System Biology Core, University of Nebraska Medical Center, Omaha, NE, USA
ChimeRScope funding source(s)
Supported by the University of Nebraska Medical Center startup funds; Biomedical Informatics Graduate Fellowship; Lymphoma Research Foundation [F-263549]; Translational Research Program of Leukemia and Lymphoma Society [6129-14]; Bioinformatics and System Biology Core at the University of Nebraska Medical Center from the Nebraska Research Initiative (NRI); Nebraska INBRE [2P20GM103427]; CCSG to the Fred and Pamela Buffett Cancer Center [5P30CA036727].

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