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ChIP Enrichment Analysis ChEA

Provides an alternative way for researchers to analyze mRNA expression data in context of genome-wide transcription-factor ChIP-X experiments collected and organized into a prior knowledge database and an interactive web-based software system. With ChEA, users can input lists of mammalian gene symbols for which the program computes over-representation of transcription factor targets from the ChIP-X database. The ChEA database allowed us to reconstruct an initial network of transcription factors connected based on shared overlapping targets and binding site proximity.

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ChEA classification

ChEA specifications

Web user interface
Computer skills:
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ChEA distribution

ChEA support


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Department of Pharmacology and Systems Therapeutics, Systems Biology Center New York (SBCNY), Mount Sinai School of Medicine, One Gustave Levy Place, New York, NY, USA; Mahopac High School, Mahopac, NY, USA

Funding source(s)

National Institutes of Health (grants P50GM071558-01A27398, R01DK088541, R01GM054508, R01DA15446 and KL2RR029885-0109)

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